TABLE 1.
Propionibacterium strains used in this studya
| Species | Clade | Ribotype | MLST8b | Strain name | Source/clinical association | deoRc |
|---|---|---|---|---|---|---|
| P. acnes | IA-1 | RT1 | ST15 | HL005PA2 | Facial skin | No |
| RT1 | ST1 | HL027PA2 | Facial skin | No | ||
| IA-2 | RT5 | ST3 | HL043PA1 | Facial skin/acne | No | |
| RT4 | ST3 | HL053PA1 | Facial skin/acne | No | ||
| IB-1 | RT8 | ST4 | HL053PA2 | Facial skin/acne | No | |
| RT8 | ST13 | HL082PA1 | Facial skin/acne | No | ||
| IB-2 | RT3 | ST2 | HL037PA1 | Facial skin | No | |
| RT3 | ST23 | HL063PA2 | Facial skin | No | ||
| IB-3 | RT1 | ST5 | KPA171202 | Culture contaminant | Yes | |
| RT1 | ST5 | HL030PA1 | Facial skin | Yes | ||
| IC | RT5 | ST85 | PV66 | Unknown/acne | Yes | |
| II | RT2 | ST30 | HL001PA1 | Facial skin/healthy skin | Yes | |
| RT6 | ST7 | HL042PA3 | Facial skin/healthy skin | Yes | ||
| RT6 | ST7 | HL110PA3 | Facial skin/healthy skin | Yes | ||
| III | NA | ST123 | HL201PA1 | Tooth/endodontitis | Yes | |
| NA | ST75 | BR-16 | Back skin/PMH | Yes | ||
| P. granulosum | NA | NA | NA | HL078PG1 | Facial skin | Yes |
| NA | NA | HL082PG1 | Facial skin | Yes | ||
| P. avidum | NA | NA | NA | HL063PV1 | Facial skin | Yes |
| NA | NA | HL083PV1 | Facial skin | Yes | ||
| NA | NA | HL307PV1 | Facial skin | Yes | ||
| P. humerusii | NA | NA | NA | HL044PA1 | Facial skin | Yes |
a
NA, not assigned; MLST, multilocus sequence type; ST, sequence type.
b
Data from the MLST8 database (https://pubmlst.org/cacnes/).
c
Homolog with deoR sequence PPA0299 from KPA171202.