. 2019 Dec 4;15(12):e1008152. doi: 10.1371/journal.ppat.1008152

Table 1. List of primers and probes used on this study to determine gene expression.

Primers and probes to test ROD21 genes
Gene	Primer exp Fw (Sequence 5´ to 3´)	Primer exp Rv (Sequence 5´ to 3´)	Probe	Hypothetical role
SEN1970	GCC ATG CGG ATT AAG CAA TAC	TTT TGC TGG ACG GCA TGA C	TCA CCG CGA TCC TA³⁰	Integrase. P4-like integrase.
SEN1975	GAA TTA AAT GGT TTG ACT GCT AGA GAG A	TCG TGC CAG ATA GGC AGT ATT ACT	AGC GGT GAA AAC C³⁰	TlpA. Cytoplasmic protein with TIR domain (Salmonella sp.) Identities: 100%.
SEN1976	GCC GAT CCC GGA CAA GA	AGT ATC GGG CTA TAA GTG TGT AAT ACC A	CAT CCC CTT GTA TCG CT³⁰	Pseudogene (putative type IV prepilin protein, S. Gallinarum. Identities: 99%).
SEN1979	GGC TAC TTC TGC CCC AAG AA	GTC AAT GGA GAA ATC AGA ACA AAA GA	ATC TTA AGC CTT GTT TCA AC³⁰	Conserved hypothetical protein (S. Enteritidis and S. Dublin). Identities: 100%. (Conjugal transfer protein TraD domain).
SEN1980	TGG TCA TAT TAT ATT GGC ACC TGT TT	CAC AAT GCT GAG GAG CTT TCA A	CGC ACC TGC TCA TAT³⁰	MobA/MobL family protein (S. Dublin) and possible conjugal transfer protein (S. Enteritidis). Identities: 100%. (MobA/MobL family).
SEN1982	CCA TCA GGC CCT GCT CAA	TGG CAC AGG GAC GAA TTC A	AAA ACC GTC GAG GAT C³⁰	Lipoprotein (S. Enteritidis). Identities: 100%.
SEN1993	GCA GAA CTC CTT GCT GCT GTT	GAG CGC GGG TCG ATT TG	CTC ATC CCA ACC TAA AA³⁰	DNA-binding protein (histone-like protein hlp-II) (S. Gallinarum and S. Enteritidis). Identities: 100% (Domain: global DNA-binding transcriptional dual regulator H-NS; Provisional).
SEN1994	AGT GCC TTT TGA GCC ATT GAA	TGC AAT TTA TAT CGG AGC ACC AT	ATG CCT TGT AAT TCG TG³⁰	Membrane protein (S. Gallinarum and S. Enteritidis). Identities: 100%.
SEN1998	GAA AAC GCC CGG CCT TAA	CGC ACC GGA TTT GGT AAA A	CAG TTC GTA AAT CCA C³⁰	Phage regulatory protein (Salmonella sp.). Identities: 100%. (Domain: Prophage CP4-57 regulatory protein (AlpA)/Predicted transcriptional regulator (Blum et al.)).