| MetaboAnalyst |
www.metaboanalyst.ca/
|
Statistical analysis |
[103] |
| MetaboSearch |
http://omics.georgetown.edu/metabosearch.html
|
Data annotation |
[104] |
| MeltDB 2.0 |
https://meltdb.cebitec.uni-bielefeld.de
|
Data processing |
[93] |
| metaP-server |
http://metabolomics.helmholtz-muenchen.de/metap2/
|
Data analysis |
[105] |
| MetExplore |
http://metexplore.toulouse.inra.fr
|
Pathway analysis |
[106] |
| Metabox |
https://github.com/kwanjeeraw/metabox
|
Analysis workflow |
[100] |
| METLIN |
https://metlin.scripps.edu/
|
Metabolite annotation |
[89] |
| MetAlign |
www.metalign.nl
|
Data processing & statistical analysis |
[95] |
| MetiTree |
http://www.metitree.nl/
|
Data annotation |
[107] |
| Metab |
www.metabolomics.auckland.ac.nz/index.php/downloads
|
Workflow analysis |
[74] |
| MetabR |
http://metabr.r-forge.r-project.org/
|
R package |
[79] |
| MetaboAnalystR |
https://github.com/xialab/MetaboAnalystR
|
R package |
[80] |
| Lilikoi |
https://github.com/lanagarmire/lilikoi
|
R package |
[81] |
| MetaboDiff |
http://github.com/andreasmock/MetaboDiff/a
|
R package |
[82] |
| MetFrag |
http://c-ruttkies.github.io/MetFrag
|
Metabolite annotation |
[108] |
| MetaGeneAlyse |
http://metagenealyse.mpimp-golm.mpg.de/
|
Metabolite data analysis |
[90] |
| Metacrop 2.0 |
http://metacrop.ipk-gatersleben.de
|
Data annotation |
[109] |
| MetAssign |
http://mzmatch.sourceforge.net/
|
Data annotation |
[110] |
| MET-COFEA |
http://bioinfo.noble.org/manuscript-support/met-cofea/
|
Data processing |
[111] |
| MetPA |
http://metpa.metabolomics.ca
|
Pathway analysis |
[91] |
| iMet-Q |
http://ms.iis.sinica.edu.tw/comics/Software_iMet-Q.html
|
Data processing |
[94] |
| Babelomics 5.0 |
http://www.babelomics.org/
|
Statistical analysis |
[101] |
| XCMS |
https://xcmsonline.scripps.edu
|
Data processing |
[85] |
| MZedDB |
http://maltese.dbs.aber.ac.uk:8888/hrmet/index.html
|
Data annotation |
[97] |
| MassBank |
http://www.massbank.jp/
|
Metabolite annotation |
[112] |
| MaxQuant |
https://www.maxquant.org/
|
Data annotation & processing |
[113] |
| MetFusion |
http://mgerlich.github.io/MetFusion/
|
Integrated compound detection |
[114] |
| MAVEN |
https://maven.apache.org/
|
Data processing |
[115] |
| MZmine2 |
http://mzmine.github.io/
|
Data processing |
[116] |
| MSEA |
http://www.metaboanalyst.ca/
|
Pathway analysis |
[92] |
| MS-Dial |
http://prime.psc.riken.jp/Metabolomics_Software/MS-DIAL/
|
Data processing |
[96] |
| MarVis |
http://marvis.gobics.de/
|
Metabolite annotation |
[117] |
| Mummichog |
http://mummichog.org
|
Pathway analysis |
[118] |
| MMCD |
http://mmcd.nmrfam.wisc.edu/
|
Metabolite annotation |
[119] |
| COVAIN |
http://www.univie.ac.at/mosys/software.html
|
Statistical analysis |
[62] |
| CAMERA |
https://bioconductor.org/packages/release/bioc/html/CAMERA.html
|
Data annotation |
[120] |
| CDK |
https://cdk.github.io
|
Structural annotation |
[121] |
| CFM-ID |
http://cfmid.wishartlab.com
|
Metabolite identification |
[122] |
| ADAP |
http://www.du-lab.org/software.htm/
|
Data processing |
[123] |
| KEGG |
http://www.genome.jp/kegg/
|
Metabolic models |
[98] |
| GenePattern |
http://software.broadinstitute.org/cancer/software/genepattern/
|
Statistical analysis |
[102] |
| Galaxy-M |
https://github.com/Viant-Metabolomics/Galaxy-M
|
Workflow analysis |
[99] |
