Table 1. The in silico analysis of the observed nonsynonymous SNPs in PBP2A using the commonly available bioinformatics tools to shows their potential effects and their potential post-translation interactions.
SNP | SIFT | Poly-Phen-2 | PROVEAN | SNAP2 | ConSurf | Phosphorylation Glycation Ubiquitylation |
FTsite | |||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
Score | Prediction | Score | Prediction | Score | Prediction | Score | Prediction | Score | Prediction | Prediction | Prediction | |
N57T | 0.55 | Tolerated | 0.081 | Benign | 1.403 | Neutral | −63 | Neutral | 5 | Average, buried | No | No |
N115Y | 0.08 | Tolerated | 0.789 | Possibly damaging | −2.051 | Neutral | 39 | Effect | 1 | Variable, exposed | No | No |
D120N | 0.07 | Tolerated | 0.059 | Benign | −1.464 | Neutral | 14 | Effect | 1 | Variable, exposed | No | No |
D139N | 0.00 | Affect function | 0.003 | Benign | −0.160 | Neutral | −10 | Neutral | 1 | Variable, exposed | No | No |
G152V | 0.00 | Affect function | 1.000 | Probably damaging | −8.937 | Deleterious | 17 | Effect | 9 | Conserved, exposed, functional | No | Yes, binding site 2 |
E189K | 1.00 | Tolerated | 0.001 | Benign | 0.680 | Neutral | 11 | Effect | 3 | Variable, buried | No | No |
F211V | 0.34 | Tolerated | 1.000 | Probably damaging | −5.970 | Deleterious | −21 | Neutral | 8 | Conserved, buried | No | No |