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. 2019 Dec 22;9(4):339–348. doi: 10.4314/ovj.v9i4.12

Table 1. The in silico analysis of the observed nonsynonymous SNPs in PBP2A using the commonly available bioinformatics tools to shows their potential effects and their potential post-translation interactions.

SNP SIFT Poly-Phen-2 PROVEAN SNAP2 ConSurf Phosphorylation
Glycation
Ubiquitylation
FTsite
Score Prediction Score Prediction Score Prediction Score Prediction Score Prediction Prediction Prediction
N57T 0.55 Tolerated 0.081 Benign 1.403 Neutral −63 Neutral 5 Average, buried No No
N115Y 0.08 Tolerated 0.789 Possibly damaging −2.051 Neutral 39 Effect 1 Variable, exposed No No
D120N 0.07 Tolerated 0.059 Benign −1.464 Neutral 14 Effect 1 Variable, exposed No No
D139N 0.00 Affect function 0.003 Benign −0.160 Neutral −10 Neutral 1 Variable, exposed No No
G152V 0.00 Affect function 1.000 Probably damaging −8.937 Deleterious 17 Effect 9 Conserved, exposed, functional No Yes, binding site 2
E189K 1.00 Tolerated 0.001 Benign 0.680 Neutral 11 Effect 3 Variable, buried No No
F211V 0.34 Tolerated 1.000 Probably damaging −5.970 Deleterious −21 Neutral 8 Conserved, buried No No