Table 3.
The statistics of the de novo transcriptome assembly.
| Species | Total size (Mb) | GC (%) | Unigene | Transcript | ||||
|---|---|---|---|---|---|---|---|---|
| Sequence number | N50 length (bp) | Longest (bp) | Sequence number | N50 length (bp) | Longest (bp) | |||
| S. oconnori | 117.00 | 0.415 | 88,676 | 1,948 | 36,581 | 831,353 | 1,527 | 36,694 |
| S. lissolabiatus | 104.06 | 0.422 | 79,073 | 1,946 | 33,187 | 667,802 | 1,573 | 33,187 |
| S. nukiangensis | 107.46 | 0.419 | 84,638 | 1,835 | 30,806 | 743,518 | 1,420 | 30,806 |
| S. plagiostomus | 98.95 | 0.419 | 83,169 | 1,725 | 17,902 | 736,405 | 1,255 | 17,910 |
| S. labiatus | 99.98 | 0.416 | 76,602 | 1,905 | 43,720 | 670,792 | 1,432 | 43,720 |
| S. davidi | 109.44 | 0.42 | 83,757 | 2,043 | 24,328 | 689,222 | 1,589 | 24,340 |
| P. kaznakovi | 173.48 | 0.409 | 154,860 | 1,564 | 77,434 | 1,363,461 | 1,198 | 77,434 |
| G. namensis | 107.09 | 0.415 | 84,464 | 1,825 | 23,933 | 813,474 | 1,294 | 23,933 |
| G. przewalskii | 105.49 | 0.413 | 78,762 | 1,974 | 28,230 | 751,137 | 1,409 | 28,231 |
| G. eckloni | 113.00 | 0.412 | 87,248 | 1,891 | 23,925 | 849,836 | 1,411 | 23,925 |
| G. selincuoensis | 122.36 | 0.406 | 106,851 | 1,588 | 25,730 | 1,187,251 | 914 | 25,730 |
| S. younghusbandi | 101.23 | 0.414 | 81,029 | 1,820 | 23,570 | 723,624 | 1,329 | 23,570 |
| S. pylzovi | 97.96 | 0.418 | 80,542 | 1,724 | 26,467 | 751,215 | 1,202 | 26,467 |
| P. extremus | 101.78 | 0.417 | 85,919 | 1,674 | 24,119 | 843,423 | 1,122 | 24,119 |
| O. stewartii# | 106.52 | 0.422 | 77,069 | 2,143 | 25,942 | 639,444 | 1,920 | 25,942 |
Note that the total size means the total base amount of all transcripts for species.
#The transcriptome data for Oxygymnocypris stewarti was reported in our previous studies17.