. 2019 Oct 22;124(2):274–287. doi: 10.1038/s41437-019-0273-4

Table 2.

Accuracies for genotyped individuals using single- and multi-trait models in scenario G9

Trait¹	Region size²	Single-trait³				Multi-trait
Trait¹	Region size²	BayesN0	ssSNPB1	ssBayesN0	ssSNPB2	BayesN0	ssSNPB1	ssBayesN0	ssSNPB2
L⁴	1 SNP	_ab0.349^e	_ab0.452^cd	_ab0.470^d	_ab0.478^c	_b0.437^d	_b0.536^b	_b0.554^b	_a0.574^a
	100 SNPs	_a0.365^d	_a0.460^c	_a0.478^c	_a0.479^c	_a0.481^c	_a0.559^b	_a0.590^a	_a0.590^a
	1 Chr	_b0.335^c	_b0.434^b	_bc0.444^b	_bc0.445^b	_b0.402^b	_c0.493^a	_c0.497^a	_b0.499^a
	WG	_b0.335^d	_b0.433^b	_c0.433^bc	_c0.433^b	_c0.362^cd	_d0.461^ab	_d0.472^a	_c0.473^a
H	1 SNP	_b0.587^g	_b0.683^e	_b0.689^de	_b0.700^bc	_b0.593^f	_b0.688^cd	_b0.699^b	_a0.712^a
	100 SNPs	_a0.611^f	_a0.698^d	_a0.716^b	_a0.716^b	_a0.622^e	_a0.707^c	_a0.725^a	_a0.725^a
	1 Chr	_c0.552^e	_c0.650^bd	_c0.651^cd	_c0.651^abcd	_c0.558^e	_c0.655^ac	_c0.657^ab	_b0.657^ab
	WG	_d0.538^d	_c0.642^c	_c0.642^bc	_c0.643^bc	_d0.543^d	_d0.644^abc	_d0.646^ab	_c0.646^a

¹L and H: low (0.1) and high (0.4) heritability traits, respectively

²Chr chromosome, WG whole genome

³ssSNPB1 and ssSNPB2: Single-step SNPBLUP, for which the variance components were obtained from BayesN0 and ssBayesN0, respectively

⁴Different alphabets mean significantly different values at a Type 1 error rate of 0.05 with Bonferroni correction. Subscripts and superscripts stand for comparisons within column and row, respectively, for each trait