Table 5.
Accuracies for non-genotyped individuals using single- and multi-trait models in scenario N5
| Trait1 | Region size2 | Single-trait3 | Multi-trait | ||||
|---|---|---|---|---|---|---|---|
| ssSNPB1 | ssBayesN0 | ssSNPB2 | ssSNPB1 | ssBayesN0 | ssSNPB2 | ||
| L4 | 1 SNP | a0.328c | a0.325c | a0.326c | a0.357a | a0.353b | a0.355ab |
| 100 SNPs | a0.327b | a0.327b | a0.326b | a0.357a | a0.355a | a0.355a | |
| 1 Chr | a0.324c | a0.325c | a0.324c | ab0.349ab | a0.347b | a0.350a | |
| WG | a0.327b | a0.325b | a0.327ab | b0.343ab | a0.350b | a0.352a | |
| H | 1 SNP | a0.506d | b0.507cd | a0.510b | a0.508bc | ab0.509b | a0.512a |
| 100 SNPs | a0.507c | a0.511ab | a0.511ab | a0.509bc | a0.512ab | a0.512a | |
| 1 Chr | ab0.503b | bc0.504ab | b0.504ab | ab0.505a | bc0.505ab | b0.506ab | |
| WG | b0.503b | c0.503b | b0.503b | b0.504ab | c0.506a | b0.506a | |
1L and H: low (0.1) and high (0.4) heritability traits, respectively
2Chr chromosome, WG whole genome
3ssSNPB1 and ssSNPB2: Single-step SNPBLUP, for which the variance components were obtained from BayesN0 and ssBayesN0, respectively
4Different alphabets mean significantly different values at a Type 1 error rate of 0.05 with Bonferroni correction. Subscripts and superscripts stand for comparisons within column and row, respectively, for each trait