TABLE 3.
Comparative account of total count length, percentage, relative abundance, and relative density of most abundant motifs in the U. hordei genome.
| Motif |
Counts |
Length |
Percent |
Average length |
Relative abundance |
Relative density |
||||||
| Uh364 | Uh4857-4 | Uh364 | Uh4857-4 | Uh364 | Uh4857-4 | Uh364 | Uh4857-4 | Uh364 | Uh4857-4 | Uh364 | Uh4857-4 | |
| A/T | 8879 | 11,910 | 71,432 | 100,935 | 12.19 | 12.08 | 8.05 | 8.47 | 441.02 | 442.07 | 3548.05 | 3746.46 |
| ACG/CGT | 5843 | 6691 | 58,590 | 66,888 | 8.02 | 6.79 | 10.03 | 10 | 290.22 | 248.35 | 2910.18 | 2482.72 |
| C/G | 3662 | 4422 | 25,275 | 30,018 | 5.03 | 4.48 | 6.9 | 6.79 | 181.89 | 164.13 | 1255.42 | 1114.2 |
| AAG/CTT | 2805 | 3224 | 27,429 | 31,446 | 3.85 | 3.27 | 9.78 | 9.75 | 139.33 | 119.67 | 1362.41 | 1167.2 |
| ACC/GGT | 2450 | 2815 | 24777 | 28,347 | 3.36 | 2.85 | 10.11 | 10.07 | 121.69 | 104.49 | 1230.68 | 1052.17 |
| AAC/GTT | 1522 | 2053 | 17,598 | 22,617 | 2.09 | 2.08 | 11.56 | 11.02 | 75.6 | 76.2 | 874.1 | 839.49 |
| AAACG/CGTTT | 814 | 994 | 8390 | 10,275 | 1.12 | 1.01 | 10.31 | 10.34 | 40.43 | 36.89 | 416.73 | 381.38 |
| AAAAG/CTTTT | 775 | 895 | 8680 | 10,105 | 1.06 | 0.91 | 11.2 | 11.29 | 38.49 | 33.22 | 431.14 | 375.07 |
| AG/CT | 664 | 838 | 12,502 | 15,328 | 0.91 | 0.85 | 18.83 | 18.29 | 32.98 | 31.1 | 620.98 | 568.94 |
| AC/GT | 501 | 540 | 10,218 | 10,816 | 0.69 | 0.55 | 20.4 | 20.03 | 24.88 | 20.04 | 507.53 | 401.46 |
| AAAAAG/CTTTTT | 384 | 514 | 6102 | 8778 | 0.53 | 0.52 | 15.89 | 17.08 | 19.07 | 19.08 | 303.09 | 325.82 |
| AAT/ATT | 291 | 419 | 3465 | 4896 | 0.4 | 0.42 | 11.91 | 11.68 | 14.45 | 15.55 | 172.11 | 181.73 |
| AAAAC/GTTTT | 285 | 349 | 3060 | 3725 | 0.39 | 0.35 | 10.74 | 10.67 | 14.16 | 12.95 | 151.99 | 138.26 |
| AAACC/GGTTT | 243 | 300 | 2445 | 3015 | 0.33 | 0.3 | 10.06 | 10.05 | 12.07 | 11.14 | 121.44 | 111.91 |
| AAAAT/ATTTT | 199 | 258 | 2275 | 2910 | 0.27 | 0.26 | 11.43 | 11.28 | 9.88 | 9.58 | 113 | 108.01 |
| AACG/CGTT | 174 | 196 | 2736 | 2996 | 0.24 | 0.2 | 15.72 | 15.29 | 8.64 | 7.28 | 135.9 | 111.2 |
| AT | 138 | 176 | 2464 | 3022 | 0.19 | 0.18 | 17.86 | 17.17 | 6.85 | 6.53 | 122.39 | 112.17 |
| AAAG/CTTT | 100 | 131 | 1452 | 1864 | 0.14 | 0.13 | 14.52 | 14.23 | 4.97 | 4.86 | 72.12 | 69.19 |
| AAAACG/CGTTTT | 91 | 115 | 1152 | 1596 | 0.12 | 0.12 | 12.66 | 13.88 | 4.52 | 4.27 | 57.22 | 59.24 |
| AAAAAT/ATTTTT | 88 | 110 | 1230 | 1464 | 0.12 | 0.11 | 13.98 | 13.31 | 4.37 | 4.08 | 61.09 | 54.34 |
| AAAAAC/GTTTTT | 78 | 107 | 1362 | 1680 | 0.11 | 0.11 | 17.46 | 15.7 | 3.87 | 3.97 | 67.65 | 62.36 |
| AAAT/ATTT | 56 | 79 | 960 | 1252 | 0.08 | 0.08 | 17.14 | 15.85 | 2.78 | 2.93 | 47.68 | 46.47 |
| AACC/GGTT | 42 | 49 | 576 | 660 | 0.06 | 0.05 | 13.71 | 13.47 | 2.09 | 1.82 | 28.61 | 24.5 |
| AAAC/GTTT | 35 | 37 | 448 | 484 | 0.05 | 0.04 | 12.8 | 13.08 | 1.74 | 1.37 | 22.25 | 17.96 |
| AAAACC/GGTTTT | 33 | 36 | 444 | 498 | 0.05 | 0.04 | 13.45 | 13.83 | 1.64 | 1.34 | 22.05 | 18.48 |
| CG | 9 | 10 | 112 | 124 | 0.01 | 0.01 | 12.44 | 12.4 | 0.45 | 0.37 | 5.56 | 4.6 |