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. 2020 Jan 21;11(1):e03117-19. doi: 10.1128/mBio.03117-19

TABLE 2.

Cryo-EM model statistics

Model statistica Value for the structure
E site occupied P site occupied Empty 50S 30S
Refinement
    Resolution 2.82 3.04 2.91 2.95 4.4
    FSC threshold 0.143 0.143 0.143 0.143 0.143
    Map resolution range (Å) 2.39–30 2.32–30 2.35–30 2.62–30 2.26–30
    Model cutoff (Å) 3 3.1 3 3 4.5
    Model composition
        Nucleotides 4,615 4,615 4,535 3,007 1,528
        Protein residues 5,457 5,458 5,457 3,117 2,311
    RMSD
        Bond lengths (Å) 0.002 0.002 0.002 0.002 0.002
        Bond angles (°) 0.484 0.460 0.479 0.448 0.434
Validation
    MolProbity score 1.48 1.45 1.49 1.48 1.65
    Clash score 5.95 6.16 5.91 5.91 11.21
    Poor rotamers (%) 0.07 0.00 0.05 0.04 0.05
    Ramachandran plot (%)
        Favored 97.16 97.43 97.05 97.09 97.62
        Allowed 2.76 2.52 2.89 2.81 2.38
        Disallowed 0.07 0.06 0.06 0.1 0
CCmask 0.82 0.85 0.83 0.86 0.74
CCbox 0.82 0.86 0.83 0.85 0.88
CCvol 0.81 0.83 0.82 0.85 0.74
a

CC, correlation coefficient.