TABLE 1.
List of strains, including culture conditions and sequencing details, used in this studya
| Bacterial strain | Medium | OD600 | Vol (ml) | Source or reference | Sequencing level | Sequence information | No. of plasmids | Environment |
|---|---|---|---|---|---|---|---|---|
| A. macleodii CUKW | Burkholder's B | 1.36 | 10 | Cusick et al. (5) | Closed genome | This study | 2 | Copper coupons |
| A. macleodii KCC02 | Burkholder's B | 1.69 | 10 | This study | Closed genome | This study | 3 | Lab mutant maintained for >1 yr with 3 mM copper |
| A. macleodii ATCC 27126T | 2216 | 1.18 | 10 | Baumann et al. (75); Gonzaga et al. (2) | Closed genome | CP003841; 454 GS FLX Titanium and Illumina Genome Analyzer IIx | None | Surface water, HI |
| A. macleodii J912 | 2216 | 0.54 | 10 | Peter McCarthy, HBOI, personal collection | NA | NA | None | Marine sponge (Spongosorites sp.), 573-ft depth |
| A. macleodii J589 | 2216 | 0.72 | 10 | Peter McCarthy, HBOI personal collection | NA | NA | None | Marine sponge (Asteropus simplex), 445-ft depth |
| A. macleodii V450 | 2216 | 0.33 | 10 | Wang et al. (9) | Contigs | Illumina HiSeq; BioSample ID SAMN05931236 | None | Marine sponge (Leiodermatium sp.), 1,288-ft depth |
| Alteromonas strain OCN004 | 2216 | 1.45 | 10 | Ushijima et al. (43) | NA | NA | None | Hawaiian rice coral (Montipora capitata), shallow water, Oahu, HI |
| Burkholder's B | 1.03 | 6 | Ushijima et al. (43) | NA | NA | None | Hawaiian rice coral (Montipora capitata), shallow water, Oahu, HI | |
| A. macleodii EZ55 | YTSS | 1 | 6 | Morris et al. (10) | Incomplete | 454 GS FLX Titanium; BioProject ID PRJNA50031 | None | Cyanobacterium Prochlorococcus coculture |
| Alteromonas strain W12 | Burkholder's B | 1.17 | 6 | Dana Hunt, Duke University Marine Lab | Contigs | Illumina HiSeq; Bioproject ID PRJNA306252 | None | Coculture with algal species Thalassiosira rotula |
| Alteromonas strain C34d | Modified Burkholder's B | 1.06 | 6 | Tran and Hadfield (8) | NA | NA | None | Crustose coralline algae |
| Alteromonas strain MR31d | Modified Burkholder's B | 1.05 | 6 | Tran and Hadfield (8) | NA | NA | None | Montipora coral reef |
a
NA, not available; HBOI, Harbor Branch Oceanographic Institute.