TABLE 3.
Parameter | Value of the parameter for: |
|||
---|---|---|---|---|
Rxn_1a | Rxn_2 | Rxn_3 | Rxn_4 | |
Total vol (μl) | 50 | 50 | 50 | 25 |
Primers | TR3-TR4 | 341f-785r | 341f-785r | Barcodes |
Master mix (μl) | 20 | 20 | 20 | 10 |
10 μM primer (μl) | 2 | 2 | 2 | 0.94 |
Template DNA (μl) | 2 | 2 | 2 | 1.25 |
Salinibacter ruber DNA (μl) | 0.59 | |||
Nuclease-free H2O (μl) | 26 | 26 | 25.41 | 12.81 |
Initial denaturation | ||||
Temp (°C) | 95 | 94 | 94 | 94 |
Duration (min) | 2 | 3 | 3 | 1.5 |
Denaturation | ||||
Temp (°C) | 95 | 94 | 94 | 94 |
Duration (min) | 1 | 0.75 | 0.75 | 0.5 |
Annealing | ||||
Temp (°C) | 55 | 60 | 60 | 60 |
Duration (min) | 1.5 | 1 | 1 | 0.5 |
Elongation | ||||
Temp (°C) | 72 | 72 | 72 | 72 |
Duration (min) | 1.5 | 1.5 | 1.5 | 1.5 |
Total no. of cycles | 35 | 35 | 35 | 10 |
Final elongation | ||||
Temp (°C) | 72 | 72 | 72 | 72 |
Duration (min) | 10 | 10 | 10 | 5 |
Rxn, reaction.