TABLE 1.
Summary of 35 Akkermansia MAGs recovered from a diverse population of children 2 to 9 years of age, living in Los Angeles, California
| Genome name | Genome properties |
Assembly properties |
||||||
|---|---|---|---|---|---|---|---|---|
| Phylogroup | % completeness | % contamination | No. of predicted proteins | % coding density | Contigs | Length (Mbp) | % GC content | |
| A. muciniphila MucT | AmI | 100 | 0.0 | 2,238 | 88.6 | 1 | 2.66 | 55.8 |
| CDI-75C-7 | AmI | 95.5 | 0.0 | 2,433 | 88.4 | 26 | 2.82 | 55.5 |
| CDI-92A-19 | AmI | 68.5 | 0.0 | 2,117 | 89.0 | 317 | 2.27 | 55.8 |
| CDI-93C-15 | AmI | 91.0 | 0.0 | 2,345 | 88.8 | 231 | 2.59 | 55.8 |
| CDI-16B-22 | AmI | 94.6 | 0.0 | 2,291 | 88.5 | 79 | 2.65 | 55.6 |
| CDI-158B-12 | AmI | 95.5 | 0.0 | 2,302 | 88.2 | 42 | 2.70 | 55.3 |
| CDI-50B-13 | AmI | 95.5 | 0.0 | 2,293 | 88.4 | 22 | 2.72 | 55.6 |
| CDI-51A-11 | AmI | 95.5 | 0.0 | 2,295 | 88.4 | 22 | 2.72 | 55.6 |
| CDI-28A-8 | AmI | 95.5 | 0.0 | 2,301 | 88.2 | 27 | 2.71 | 55.4 |
| CDI-85A-12 | AmI | 95.5 | 0.0 | 2,225 | 88.4 | 19 | 2.66 | 55.4 |
| CDI-30A-11 | AmI | 95.5 | 0.0 | 2,272 | 88.4 | 22 | 2.68 | 55.5 |
| CDI-42C-15 | AmI | 95.5 | 0.0 | 2,340 | 88.4 | 25 | 2.74 | 55.2 |
| CDI-151B-10 | AmI | 94.6 | 0.0 | 2,383 | 88.3 | 64 | 2.77 | 55.4 |
| CDI-193A-6 | AmI | 95.5 | 0.0 | 2,416 | 88.3 | 32 | 2.83 | 55.4 |
| CDI-143C-7 | AmII | 81.1 | 0.9 | 2,301 | 88.4 | 206 | 2.67 | 58.7 |
| CDI-10B-12 | AmII | 94.6 | 0.0 | 2,439 | 88.1 | 32 | 2.98 | 58.3 |
| CDI-128B-11 | AmII | 92.8 | 0.0 | 2,428 | 88.1 | 22 | 2.96 | 58.3 |
| CDI-129B-12 | AmII | 88.3 | 0.0 | 2,375 | 88.1 | 229 | 2.70 | 58.5 |
| CDI-77C-9 | AmII | 95.5 | 0.0 | 2,435 | 88.0 | 25 | 2.99 | 58.2 |
| CDI-24B-9 | AmII | 94.6 | 0.0 | 2,450 | 88.2 | 31 | 3.02 | 58.1 |
| CDI-182B-6 | AmII | 95.5 | 0.0 | 2,478 | 88.1 | 22 | 3.02 | 58.3 |
| CDI-198C-9 | AmII | 95.5 | 0.0 | 2,512 | 88.3 | 51 | 3.00 | 58.2 |
| CDI-69C-9 | AmII | 95.5 | 0.0 | 2,421 | 88.2 | 24 | 2.96 | 58.2 |
| CDI-138A-11 | AmII | 95.5 | 0.0 | 2,483 | 88.0 | 25 | 3.01 | 58.2 |
| CDI-70C-8 | AmII | 95.5 | 0.0 | 2,481 | 88.0 | 32 | 3.01 | 58.2 |
| CDI-26A-8 | AmII | 92.8 | 0.9 | 2,610 | 88.1 | 251 | 2.95 | 58.0 |
| CDI-34A-8 | AmII | 95.5 | 0.0 | 2,558 | 87.2 | 29 | 3.09 | 57.8 |
| CDI-65B-6 | AmII | 87.4 | 0.0 | 2,538 | 87.4 | 55 | 3.04 | 57.8 |
| CDI-203B-7 | AmII | 94.6 | 0.9 | 2,479 | 87.8 | 25 | 2.99 | 58.1 |
| CDI-150B-9 | AmIV | 95.5 | 0.0 | 2,457 | 87.7 | 29 | 2.99 | 57.2 |
| CDI-12C-16 | AmIV | 95.5 | 0.0 | 2,461 | 87.8 | 32 | 2.99 | 57.2 |
| CDI-156A-7 | AmIV | 95.5 | 0.9 | 2,532 | 87.5 | 56 | 3.05 | 56.7 |
| CDI-74B-7 | AmIV | 94.6 | 0.9 | 2,502 | 87.4 | 48 | 3.01 | 56.7 |
| CDI-18B-8 | AmIV | 94.6 | 0.0 | 2,509 | 88.0 | 124 | 2.95 | 56.9 |
| CDI-148A-8 | AmIV | 95.5 | 0.9 | 2,557 | 87.3 | 46 | 3.04 | 56.0 |
| CDI-13A-11 | AmIV | 95.5 | 0.0 | 2,670 | 88.1 | 66 | 3.20 | 56.6 |
| Averagea | 93.4 | 0.2 | 2,419.7 | 88.1 | 68.23 | 2.87 | 56.9 | |
a
The genome of A. muciniphila MucT was not included in the averages.