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. 2020 Jan 21;86(3):e02117-19. doi: 10.1128/AEM.02117-19

TABLE 2.

PCR primers and bacterial isolates used in this work

Gene or strain Primer name Primer (5′ to 3′)a Expected amplicon size (bp) Source Reference
Gene
    cbiL Precorrin-2 forward TYTTCAGCATGTCSCGYGAC 358 This work
    cbiL Precorrin-2 reverse GCGGCTRCGGTAGGTYTT 358 This work
    cbiC cbiC forward ATCCACACCACGGCRGAC 500 This work
    cbiC cbiC reverse GGCGTGCAGGGTRGT 500 This work
    cbiFGH cbiG forward GTSAGCAGCGTYTTYG 340 This work
    cbiFGH cbiG reverse ATGAGSGCCTGCCKKCCGA 340 This work
    cdiD cbiD forward GACCCSGACTGCACSCA 379 This work
    cdiD cbiD reverse TAGGCTTCRTGGCTG 379 This work
    16S rRNA 8F AGAGTTTGATCCTGGCTCAG Variable 79
    16S rRNA 515F GTGCCAGCMGCCGCGGTAA Variable 79
    16S rRNA 806R GGACTACHVGGGTWTCTAAT Variable 80
    16S rRNA 1492R TACGGTTACCTTGTTACGA Variable 81
Strain
 A. muciniphila MucT Human adult male; ATCC BAA-835 13
    A. glycaniphila PytT Reticulated python; DSM 100705 27
 A. muciniphila CSUN-7 Human adult male This work
 A. muciniphila CSUN-12 Human adult male This work
 A. muciniphila CSUN-17 Human adult male This work
 A. muciniphila CSUN-23 Human adult male This work
 A. muciniphila CSUN-27 Human adult male This work
 A. muciniphila CSUN-28 Human adult male This work
 A. muciniphila CSUN-31 Human adult female This work
 A. muciniphila CSUN-33 Human adult male This work
 A. muciniphila CSUN-34 Human adult male This work
 A. muciniphila CSUN-36 Human adult female This work
a

Y = C or T, S = C or G, B = G, T, or C, and R = G or A.