TABLE 2.
Gene or strain | Primer name | Primer (5′ to 3′)a | Expected amplicon size (bp) | Source | Reference |
---|---|---|---|---|---|
Gene | |||||
cbiL | Precorrin-2 forward | TYTTCAGCATGTCSCGYGAC | 358 | This work | |
cbiL | Precorrin-2 reverse | GCGGCTRCGGTAGGTYTT | 358 | This work | |
cbiC | cbiC forward | ATCCACACCACGGCRGAC | 500 | This work | |
cbiC | cbiC reverse | GGCGTGCAGGGTRGT | 500 | This work | |
cbiFGH | cbiG forward | GTSAGCAGCGTYTTYG | 340 | This work | |
cbiFGH | cbiG reverse | ATGAGSGCCTGCCKKCCGA | 340 | This work | |
cdiD | cbiD forward | GACCCSGACTGCACSCA | 379 | This work | |
cdiD | cbiD reverse | TAGGCTTCRTGGCTG | 379 | This work | |
16S rRNA | 8F | AGAGTTTGATCCTGGCTCAG | Variable | 79 | |
16S rRNA | 515F | GTGCCAGCMGCCGCGGTAA | Variable | 79 | |
16S rRNA | 806R | GGACTACHVGGGTWTCTAAT | Variable | 80 | |
16S rRNA | 1492R | TACGGTTACCTTGTTACGA | Variable | 81 | |
Strain | |||||
A. muciniphila MucT | Human adult male; ATCC BAA-835 | 13 | |||
A. glycaniphila PytT | Reticulated python; DSM 100705 | 27 | |||
A. muciniphila CSUN-7 | Human adult male | This work | |||
A. muciniphila CSUN-12 | Human adult male | This work | |||
A. muciniphila CSUN-17 | Human adult male | This work | |||
A. muciniphila CSUN-23 | Human adult male | This work | |||
A. muciniphila CSUN-27 | Human adult male | This work | |||
A. muciniphila CSUN-28 | Human adult male | This work | |||
A. muciniphila CSUN-31 | Human adult female | This work | |||
A. muciniphila CSUN-33 | Human adult male | This work | |||
A. muciniphila CSUN-34 | Human adult male | This work | |||
A. muciniphila CSUN-36 | Human adult female | This work |
Y = C or T, S = C or G, B = G, T, or C, and R = G or A.