Fig. 3.
Variation between replicates and amplification frequency at low copy number. (A) 10 copies of linearised plasmid per reaction shows low variation between 72 replicates, (B) melt curves centred on 87 degrees C and (C) Time frequency distribution. (D) Increased variation between replicates observed at 1 copy with possible false positives (in black) corresponding to higher melt temperatures (E) corresponding to positive results after 80 minutes. The frequency distribution (F) shows the increased variation of positive results at low copy number. The amplification frequency from the 1 to 10 copies per partition data are compared to the predicted amplification frequency (dotted line) based on digital PCR calculations. (G) Amplification frequencies for positive results less than 90 minutes (green), 40 minutes (orange) and 30 minutes (purple) with (H) average Time values at each copy number for results less than 90, 40 and 30 minutes (error bars removed for simplicity) and (I) variance for assay results less than 90, 40 and 30 minutes.