Table 2. Ranking and statistical analyses of reference genes in brain of six haplochromine species from three East African lakes.
BestKeeper | geNorm | NormFinder | ||||
---|---|---|---|---|---|---|
Ranking | I | Ranking | M | Ranking | SV | |
Lake Malawi | rps11 | 0.080 | actb1 | 0.374 | actb1 | 0.148 |
tuba1 | 0.134 | rps11 | 0.384 | hprt1 | 0.176 | |
rps18 | 0.153 | tuba1 | 0.392 | rps11 | 0.210 | |
actb1 | 0.171 | hprt1 | 0.400 | tuba1 | 0.280 | |
hprt1 | 0.176 | rps18 | 0.422 | rps18 | 0.284 | |
ef1a | 0.348 | ef1a | 0.491 | ef1a | 0.295 | |
tbp | 0.349 | tbp | 0.577 | tbp | 0.519 | |
gapdh | 0.935 | gapdh | 0.978 | gapdh | 1.168 | |
Lake Victoria | rps11 | 0.076 | ef1a | 0.387 | ef1a | 0.228 |
actb1 | 0.159 | rps11 | 0.393 | actb1 | 0.283 | |
tbp | 0.167 | tbp | 0.403 | rps11 | 0.295 | |
ef1a | 0.194 | actb1 | 0.408 | rps18 | 0.386 | |
hprt1 | 0.204 | rps18 | 0.429 | tbp | 0.413 | |
rps18 | 0.208 | hprt1 | 0.490 | hprt1 | 0.525 | |
tuba1 | 0.218 | tuba1 | 0.516 | tuba1 | 0.656 | |
gapdh | 0.963 | gapdh | 1.298 | gapdh | 2.923 | |
Lake Tanganyika | rps11 | 0.197 | tuba1 | 0.535 | rps11 | 0.033 |
actb1 | 0.248 | rps11 | 0.539 | rps18 | 0.036 | |
rps18 | 0.257 | rps18 | 0.549 | tbp | 0.087 | |
tbp | 0.292 | tbp | 0.599 | tuba1 | 0.138 | |
tuba1 | 0.300 | hprt1 | 0.604 | actb1 | 0.158 | |
ef1a | 0.399 | ef1a | 0.643 | hprt1 | 0.160 | |
hprt1 | 0.400 | actb1 | 0.731 | ef1a | 0.386 | |
gapdh | 1.867 | gapdh | 1.996 | gapdh | 4.896 |
Notes.
- I
- BestKeeper index calculated through standard deviations in expression
- SV
- stability value
- M
- M value of stability