Table 1. Protein information.

Entry ID	Entry name	Protein names	Gene names	References
Q9BXN1	ASPN_HUMAN	Asporin	ASPN	Ošt’ádal et al. (2015)
P21810	PGS1_HUMAN	Biglycan	BGN	Ošt’ádal et al. (2015)
Q8IUL8	CILP2_HUMAN	Cartilage intermediate layer protein 2, CILP-2	CILP2	Eckhardt et al. (2019)
P35222	CTNB1_HUMAN	Catenin beta-1 (Beta-catenin)	CTNNB1	Poon, Li & Alman (2009)
P02461	CO3A1_HUMAN	Collagen alpha-1(III) chain	COL3A1	Eckhardt et al. (2019)
P20908	CO5A1_HUMAN	Collagen alpha-1(V) chain	COL5A1	Eckhardt et al. (2019)
P12109	CO6A1_HUMAN	Collagen alpha-1(VI) chain	COL6A1	Eckhardt et al. (2019)
Q99715	COCA1_HUMAN	Collagen alpha-1(XII) chain	COL12A1	Eckhardt et al. (2019)
Q05707	COEA1_HUMAN	Collagen alpha-1(XIV) chain (Undulin)	COL14A1	Eckhardt et al. (2019)
P08123	CO1A2_HUMAN	Collagen alpha-2(I) chain	COL1A2	Eckhardt et al. (2019)
P12110	CO6A2_HUMAN	Collagen alpha-2(VI) chain	COL6A2	Eckhardt et al. (2019)
P12111	CO6A3_HUMAN	Collagen alpha-3(VI) chain	COL6A3	Eckhardt et al. (2019)
P20849	CO9A1_HUMAN	Collagen alpha-1(IX) chain	COL9A1	Wang et al. (2013a) and Wang et al. (2013b)
O94907	DKK1_HUMAN	Dickkopf-related protein 1, Dickkopf-1	DKK1	Poon, Li & Alman (2009)
Q06828	FMOD_HUMAN	Fibromodulin	FMOD	Eckhardt et al. (2019)
P02751	FINC_HUMAN	Fibronectin (Cold-insoluble globulin, CIG)	FN1	Ošt’ádal et al. (2015)
Q14192	FHL2_HUMAN	Four and a half LIM domains protein	FHL2	Wang et al. (2008)
P35453	HXD13_HUMAN	Homeobox protein Hox-D13 (Homeobox protein Hox-4I)	HOXD13	Wang et al. (2008)
P51884	LUM_HUMAN	Lumican	LUM	Ošt’ádal et al. (2015)
Q16853	AOC3_HUMAN	Membrane primary amine oxidase	AOC3	Ošt’ádal et al. (2015)
P20774	MIME_HUMAN	Mimecan (Osteoglycin)	OGN	Ošt’ádal et al. (2015)
Q15063	POSTN_HUMAN	Periostin (Osteoblast-specific factor 2)	POSTN	Ošt’ádal et al. (2015)
P51888	PRELP_HUMAN	Prolargin	PRELP	Ošt’ádal et al. (2015)
Q7Z7G0	TARSH_HUMAN	Target of Nesh-SH3	ABI3BP	Ošt’ádal et al. (2015)
P24821	TENA_HUMAN	Tenascin, TN (Cytotactin)	TNC	Eckhardt et al. (2019) and Ošt’ádal et al. (2015)
Q15582	BGH3_HUMAN	TGF-β-induced protein ig-h3	TGFBI	Eckhardt et al. (2019)
P48436	SOX9_HUMAN	Transcription factor SOX-9	SOX9	Wang et al. (2013a) and Wang et al. (2013b)
P10071	GLI3_HUMAN	Transcriptional activator GLI3	GLI3	Cao et al. (2009)
P01137	TGFB1_HUMAN	TGF-β-1 proprotein	TGFB1	Wang et al. (2013a) and Wang et al. (2013b)
P13611	CSPG2_HUMAN	Versican core protein	VCAN	Eckhardt et al. (2019) and Ošt’ádal et al. (2015)