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The LD-block structuring as a function of SNP density. (Panel A) displays a LD block of length 29 Kb based on estimates of pair-wise D’ among 13 SNPs located on BTA25 in Fleckvieh cattle. (Panel B) displays LD structure in the same region in sequencing resolution consisting of 115 markers. The LD blocks are obtained using “confidence intervals” algorithm (Gabriel et al., 2002) in Haploview (Barrett et al., 2005). LD analysis has been conducted with a constant number of individuals.
