Table 1.

Overall performance of each method and Panwar et al.³⁴ AUROC column shows the median of the AUROC; AUPRC displays the median of the AUPRC for each method; #perfect column indicates the number of total functions with perfect performance. AUROC* and AUPRC* columns show the median of the AUROC and the AUPRC for those GO terms annotated to more than 20 and less than 300 genes to make a fair comparison with Panwar et al.

Method	AUROC	AUPRC	#perfect	AUROC*	AUPRC*
Correlation method	0.739	0.0087	11	0.733	0.0122
Domain-based regression	0.657	0.0293	147	0.673	0.0473
Combination method	0.816	0.0414	191	0.815	0.0646
Panwar et al.34				0.641	0.011