Table 2.
Overall performance of each method grouped by function ontologies. AUROC columns show the median of the AUROC. AUPRC columns display the median of the AUPRC for each method. %perfect column indicate the percentage of functions predicted with perfect performance for each ontology.
| Method | Cellular Component | Molecular Function | Biological Process | ||||||
|---|---|---|---|---|---|---|---|---|---|
| AUROC | AUPRC | %perfect | AUROC | AUPRC | %perfect | AUROC | AUPRC | %perfect | |
| Correlation method | 0.785 | 0.0132 | 0.39% | 0.727 | 0.0065 | 0.22% | 0.737 | 0.0087 | 0.15% |
| Domain-based regression | 0.685 | 0.0536 | 2.94% | 0.749 | 0.1929 | 7.91% | 0.640 | 0.0216 | 1.41% |
| Combination method | 0.864 | 0.0958 | 4.91% | 0.881 | 0.1890 | 9.62% | 0.801 | 0.0308 | 1.85% |