Table 2.

Kyoto Encyclopedia of Genes and Genomes enrichment analysis of modules associated with R- or S-line significantly in weighted gene co-expression network analysis.

Module	Pathway	Description	p_value	Associated sample
Purple	ath00966	Glucosinolate biosynthesis	7.92E−09	R_12h
	ath01210	2-Oxocarboxylic acid metabolism	8.52E−07
	ath00290	Valine, leucine, and isoleucine biosynthesis	2.69E−04
Salmon	ath00950	Isoquinoline alkaloid biosynthesis	1.40E−02	R_12h
	ath00960	Tropane, piperidine, and pyridine Alkaloid biosynthesis	2.05E−02
	ath00350	Tyrosine metabolism	2.45E−02
	ath00410	Beta-alanine metabolism	2.62E−02
	ath00360	Phenylalanine metabolism	2.94E−02
	ath00260	Glycine, serine, and threonine metabolism	4.71E−02
	ath00630	Glyoxylate and dicarboxylate metabolism	4.87E−02
Green	ath00010	Glycolysis/gluconeogenesis	9.98E−03	S_12h
	ath00380	Tryptophan metabolism	1.54E−02
	ath00620	Pyruvate metabolism	4.94E−02
Magenta	ath00940	Phenylpropanoid biosynthesis	1.51E−02	S_24h
Pink	ath04712	Circadian rhythm—plant	1.53E−02	R_60h
	ath03008	Ribosome biogenesis in eukaryotes	3.38E−02
Yellow	ath04016	MAPK signaling pathway—plant	2.33E−02	S_60h
	ath00760	Nicotinate and nicotinamide metabolism	3.47E−02
Blue	ath00591	Linoleic acid metabolism	6.55E−04	R_96h
	ath04075	Plant hormone signal transduction	7.48E−03
	ath00592	Alpha-linolenic acid metabolism	1.33E−02
	ath00920	Sulfur metabolism	1.59E−02
	ath00400	Phenylalanine, tyrosine, and tryptophan biosynthesis	2.48E−02

Bold font indicates the genes of three modules enriched in six pathways significantly.