Table I.

Polymorphisms, primers and probes used in this study.

Polymorphism	Forward primers	Reverse primers	Reporter _VIC	Reporter _FAM
466 (A>C)	AGAAAGGCTTCC	CACCAGGTACCTCA	TCTCATGAA	TCATGCAG
	TAGATGAGATGGA	ATTTGTAGAAGT	GAATCAG	AATCAG
663 (GT>del)	AGGACTTAGGACATA	GGAGCATGTGAGG	CACTTTTCTGGT	CTTTTCTGGT
	ACTGAATTTTCTATTTT	GTGAGATACT	GTGTGTATA	GTGTGTGTATA
861 (G>A)	GCACTACCCATGA	TTCAGTTGCCTGG	ACGAGAATAAA	CGAGAATAG
	TAGATGTTAAACAA	GCTTATTG	AAATTAGCC	AAAATTAGC
2331 (C>T)	GTGACTTGGGA	GGCTCATAATGAT	CACGGAGTTCT	ACGGAGTTC
	AAGAGCTTGGA	CAGTGCTTGTG	TTCGGACT	TTTCGAACT
5072 (A>C)	CAGGTATTGTTATTT	CGGCATAATCATG	TTAGTACTGCA	AGTACTGCAA
	GTAATTTGACCCTTGT	GTACAATGTGTT	AAATGTTATG	ACTGTTATG
5229 (G>T)	TGGATTTCAATAG	TGTTTAACGGAATTAAT	CTTTTTTAGAATTACC	CTTTTTTATAATTACCAT
	CATAGCTTCAAGTT	ATACTATATTGAGCTTA	ATATCATCATAGT	ATCATCATAGTGAA
5625 (G>A)	AATGAAATATCAGGT	CAGTTAAAAAGTTAAGG	ACTTAGTTATTAC	CTTAGTTATTA
	ATGCTTCCTTTGACT	AACACATTTTTAGGGA	CACTTATAC	CCGCTTATAC
6064 (T>C)	GTTTTGAGTAAATGAC	TCAAAAGATAGCTATTT	ACTCACACACT	ACTCACACAT
	AAGATGTGGTAAATGA	TATCAGTCATGCTTACA	CTATATAC	TCTATATAC
8344 (TTATA>del)	AAATGAGTTTTGAC	CCATCTTGTGACAGTG	TTCAACTTATAAG	TTCAACTTATATTATA
	GTCTTTTTACTTGA	TTTAAGTATTCA	AACGAAAGTAA	AGAACGAAAGTA
8494 (C>T)	TCCATGATGCATTAGA	GCACTGATACCTGT	CTTTTGGTC	ACTTTTGGT
	AGTAACTAATGTTTGA	TTTTGTTTGATGA	ATTTTTC	TATTTTTC
10494 (T>C)	TCTGCTGACAAA	CTTATCTTTTACATAAGTTA	CACTGAAACAT	ACTGAAACAT
	ACCTGGGAATTT	AATACACATTTGTCTGAGG	TCGCATACA	TCACATACA
10848 (G>A)	ACTGTGTTGGAAAA	TCTTCTAGACTAGGC	CTTTACAGAAG	CTTTACAGAAGA
	TGTCTAGTTTGTGTA	AATGAAAATAAGCT	ATGAMAAACA	TGGMAAAC
10935 (A>G)	AAGAAGAAGAAAAAAAT	GCCCAACTTTGTATA	ACTTTGTGC	CTTTGTGC
	ACACAATAAGGCAAAGA	ATTTCCTCCTCTT	CTCCTTCA	CCCCTTCA

Numbers for polymorphism refer to positions in the Genbank entry AY382629 and as detailed at http://pga.gs.washington.edu/data/ptgs2/ptgs2.ColorFasta.html