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. 2020 Jan 24;6(4):eaax3173. doi: 10.1126/sciadv.aax3173

Fig. 2. A time to threshold method for conjugation quantification.

Fig. 2

(A) The principle of time to threshold quantification. Consider the exponential growth of the transconjugant from an initial density T0 (top panel). The time (τ) required for the population to reach a set threshold (TC) is uniquely determined by T0 and the specific growth rate (μ). This defines a log-linear relationship between T0 and τ: lnT0 = ln TC − μτ (bottom panel). (B) Quantification of T0 is complicated by the presence of donor and recipient cells. Top panel: Although strong antibiotic selection is applied against donor and recipient cells during transconjugant outgrowth, death is not instantaneous (i.e., conjugation may still occur). Bottom panel: Modeling reveals conjugation of variable efficiency (η) during outgrowth causes a deviation from the log-linear relationship. This effect is amplified with smaller T0, where transconjugants produced from outgrowth conjugation—not outgrowth alone—may comprise a sizeable proportion of the total transconjugant population. (C) Correcting for outgrowth conjugation. Top panel: The growth contribution from the transconjugant alone can be approximated by the difference (ΔN) between the growth curves originating from the conjugation mixture (T0 > 0) and conjugation control (T0 = 0). Darker curves represent higher T0. Bottom panel: Using ΔN, the log-linear relationship between T0 and τ is maintained even in the presence of conjugation during outgrowth. (D) Applying the time to threshold method to experimental data. T0, spanning six orders of magnitude, maintains a strong correlation (R2 > 0.99) with τ from a ΔOD threshold. Darker curves represent higher T0.