| COOT | Crystallographic Object-Oriented Toolkit |
| CTP | Cytidine 5′-triphosphate |
| GTP | Guanosine 5′-triphosphate |
| GMPPN | Guanosine-5’-(β-amino)-diphosphate |
| HddC | d-glycero-α-d-manno-heptose-1-phosphate guanylyltransferase |
| HEPES | 4-(2-Hydroxyethyl) piperazine-1-ethanesulfonic acid |
| LPS | Lipopolysaccharide |
| NZY | NZ amine - yeast extract |
| PHENIX | Python-based Hierarchical ENvironment for Integrated Xtallography |
| UDPGP | UTP-glucose-1-phosphate uridylyltransferases/UDP-glucose pyrophosphorylase |
| UTP | Uridine 5′-triphosphate |
| YPT | Yersinia pseudotuberculosis |
| YP | Yersinia pestis |
| YE | Yersinia enterocolitica |
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