Table 2.

Log-ratio and replication rates (iRep) for select bacteria

Genome	LR(RF1)	LR(RF2)	LR(RF3)	LR(RF4)	iRep D166	iRep D284
LAC_CHLX01	1.05	1.17	2.27	1.73	1.16	1.32
LAC_PROT02	− 1.54	− 1.41	− 0.31	− 0.85	1.17	1.30
LAC_PROT03	− 1.50	− 1.37	− 0.27	− 0.81	1.32	1.40
LAC_CHLX02	− 2.91	− 2.79	− 1.68	− 2.23	1.16	1.17
LAC_ACD03	− 0.99	− 0.86	0.24	− 0.30	1.19	1.35
LAC_BACT04	− 0.77	− 0.64	0.46	− 0.08	1.26	1.26
LAC_IGN05	− 0.33	− 0.20	0.90	0.36	1.38	1.51
LAC_PROT19	− 2.09	− 1.96	− 0.86	− 1.40	1.22	1.32
LAC_IGN07	− 0.98	− 0.85	0.25	− 0.29	1.30	1.48
LAC_PROT21	− 1.18	− 1.06	0.04	− 0.50	NA	1.29
LAC_BAC19	− 0.13	0.00	1.10	0.56	NA	1.38
LAC_BAC20	− 1.17	− 1.04	0.06	− 0.48	1.13	1.19
LAC_BACT12	− 1.72	− 1.59	− 0.49	− 1.03	1.14	1.18
LAC_NIT01	− 1.93	− 1.80	− 0.70	− 1.24	1.25	1.31
LAC_CHLX06	− 0.18	− 0.05	1.05	0.51	1.21	1.28
LAC_PROT22	− 1.23	− 1.10	0.00	− 0.54	1.36	1.24
LAC_PLT02	− 2.12	− 1.99	− 0.89	− 1.43	2.13	1.07
LAC_CHLX07	0.00	0.13	1.23	0.69	1.69	NA
LAC_BAC21	− 1.31	− 1.18	− 0.08	− 0.62	1.13	1.25
LAC_CHLX09	0.25	0.37	1.48	0.93	1.56	1.63
LAC_CHLX10	0.43	0.55	1.66	1.11	1.26	1.42
LAC_BAC22	0.27	0.40	1.50	0.96	NA	1.39
LAC_BAC23	− 0.31	− 0.18	0.92	0.38	1.17	1.17
LAC_PROT27	− 0.35	− 0.23	0.88	0.33	2.06	1.56
LAC_PROT28	− 0.69	− 0.56	0.54	0.00	1.33	1.27
LAC_PROT30	− 0.48	− 0.36	0.75	0.20	NA	1.89
LAC_D-T02	− 0.43	− 0.30	0.80	0.25	NA	1.59