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Phylogenetic tree of Entercoccus faecium genome sequences from the present study and genome sequences from the NCBI GenBank database based on analysis of single-nucleotide variants (SNVs) of the core genes. Entercoccus faecium DO served as the reference genome. Origin of isolates are as indicated in the figures and are grouped by colour into clinical (red), agricultural/food (green) and wastewater/water (blue) groups
