Table 1. Summary of gene/element feature of Dipsastraea rotumana, Favites pentagona, and Hydnophora exesa.
Gene/ Element | Strand | Size (bp) | GC-Percent (%) | Amino Acids (aa) | InferredInitiation Codon | InferredTermination Codon | Anticodon | Intergenic Nucleotide* (bp) |
---|---|---|---|---|---|---|---|---|
tRNAMet | H | 72 | 43.06–44.44 | UAC (Y) | 674–1448 | |||
16S rRNA | H | 1698–1951 | 31.08–31.27 | 0–193 | ||||
ND5 5′ | H | 711 | 32.35–32.84 | 236 | ATG | 0–49 | ||
ND1 | H | 948 | 34.81–35.17 | 315 | ATG | TAG | 109–110 | |
Cyt b | H | 1140 | 33.33–33.77 | 379 | ATG | TAA | 2 | |
ND2 | H | 1287 | 31.88–32.42 | 428 | ATA | TAA | 25 | |
ND6 | H | 561 | 30.84–31.55 | 186 | ATG | TAA | 1 | |
ATP6 | H | 678 | 32.45–32.68 | 225 | ATG | TAA | −1 | |
ND4 | H | 1440 | 32.24–33.82 | 479 | ATG | TAG | −1 | |
12S rRNA | H | 910–911 | 34.58–35.05 | 108–138 | ||||
COIII | H | 780 | 36.79–37.18 | 259 | GTG | TAA | 67–125 | |
COII | H | 708 | 33.63–34.6 | 235 | ATG | TAA | 626–713 | |
ND4L | H | 300 | 28.67–29.96 | 99 | ATG | TAA | –19 | |
ND3 | H | 342 | 31.29–31.76 | 113 | ATG | TAA | 2 | |
ND5 3′ | H | 1104 | 30.34–30.53 | 367 | TAG | 56 | ||
tRNATrp | H | 70–71 | 39.44–40.00 | AUC (I) | −2 | |||
ATP8 | H | 198 | 19.70–20.71 | 65 | ATG | TAA | 3 | |
COI | H | 1590 | 35.43–35.94 | 529 | ATG | TAA | −1–724 |
As for the adjacent genes, positive number represented spaced, negative number indicated overlap.