Table 3.
Gene expression characterestics.
Symbol | Expr Fold change | findings | Symbol | Expr Fold change | findings |
---|---|---|---|---|---|
Up-regulatation | Down-regulated | ||||
Invasion of tumor | |||||
POSTN | 286.345 | Increases | EDN3 | −248.929 | Decreases |
NRP1 | 117.774 | Increases | VCAN* | −243.495 | Increases |
IGFBP5* | 26.687 | Decreases | IL24 | −15.763 | Decreases |
MMP1 | 20.329 | Increases | SERPINE1* | −9.371 | Increases |
TGFBR2* | 6.627 | Decreases | SFRP1 | −6.729 | Decreases |
ITGA1 | 4.868 | Increases | MMP2* | −6.046 | Increases |
TBX2 | 2.561 | Increases | GPC1* | −4.435 | Increases |
HMGB3* | 2.021 | Decreases | CEACAM1* | −4.131 | Increases |
SPHK1 | 2.012 | Increases | EGF* | −3.683 | Increases |
CTGF* | −2.077 | Decreases | CSF1* | −2.879 | Increases |
Migration of melanoma cell | |||||
NRP1* | 117.774 | Decreases | VCAN | −243.495 | Affects |
SDC2 | 11.904 | Increases | L1CAM* | −20.041 | Increases |
TNC | 2.217 | Increases | SERPINA5* | −10.969 | Increases |
SPHK1 | 2.012 | Increases | SERPINE1* | −9.371 | Increases |
MMP2* | −6.046 | Increases | |||
EGF* | −3.683 | Increases | |||
FN1* | −2.15 | Increases | |||
Cell proliferation of tumor cell lines | |||||
POSTN | 286.345 | Increases | PRAME* | −411.078 | Increases |
SERPINB2* | 240.999 | Decreases | VCAN* | −243.495 | Increases |
IL13RA2 | 191.243 | Affects | EMILIN2 | −124.892 | Decreases |
NRP1 | 117.774 | Affects | TRPM2* | −94.449 | Increases |
HTN1 | 60.939 | Increases | SYNM* | −26.275 | Increases |
MAF* | 50.99 | Decreases | PDGFB* | −22.149 | Increases |
POU4F1 | 50.781 | Increases | L1CAM* | −20.041 | Increases |
VIP | 39.551 | Increases | CARD10* | −16.191 | Increases |
CDK14 | 30.195 | Increases | IL24 | −15.763 | Decreases |
IGFBP5 | 26.687 | Increases | S100A4* | −15.312 | Increases |
Colony formation | |||||
POSTN | 286.345 | Affects | VCAN* | −243.495 | Increases |
HTN3* | 98.45 | Decreases | NUPR1 | −31.659 | Decreases |
VIP | 39.551 | Increases | PDGFB* | −22.149 | Increases |
TP63 | 8.144 | Increases | IL24 | −15.763 | Decreases |
CDCA7L | 4.871 | Increases | S100A4* | −15.312 | Increases |
ITGA1 | 4.868 | Increases | SERPINE1 | −9.371 | Decreases |
ALDH1A1 | 4.81 | Affects | TBX3* | −7.463 | Increases |
HAS2 | 4.155 | Increases | DUSP5* | −6.896 | Increases |
TNC | 2.217 | Affects | SFRP1* | −6.729 | Increases |
LIMA1* | 2.133 | Decreases | PTGES* | −6.519 | Increases |
*means that the fold changes went the opposite direction compared with previous findings.