Table 4.
Locations and estimates of QTL for plant height (cm) on the consensus map, including chromosomes 2B, 3B, 5A, 5R, 7A, and using a parental model run on all the lines from the three mapping populations with the mppR package
| Chr | Closest marker | %PVa | LODb | Posc | Ranged | Parent | Effect | T teste |
|---|---|---|---|---|---|---|---|---|
| 5R | Xiac129 | 53.3 | 36.0 | 79.4 | 7.9 | Tulus | − 0.5 | n.s |
| F1(Agos´xGren´) | − 14.1 | *** | ||||||
| ElPaso | 0.1 | n.s | ||||||
| 5A | 3622789|F|0-8:G > A-8:G > A | 1.9 | 3.3 | 71.9 | 66.5 | Tulus | 0.2 | n.s |
| F1(Agos´xGren´) | − 1.7 | n.s | ||||||
| ElPaso | 5.4 | *** | ||||||
| 5A | 4211970|F|0-17:G > C-17:G > C | 1.4 | 4.4 | 106.3 | 29.6 | Tulus | − 1.9 | * |
| F1(Agos´xGren´) | − 0.9 | n.s | ||||||
| ElPaso | − 2.1 | ** | ||||||
| 5A | 3619312|F|0-12:G > C-12:G > C | 3.0 | 5.5 | 164.2 | 6.9 | Tulus | − 1.6 | . |
| F1(Agos´xGren´) | − 3.6 | *** | ||||||
| ElPaso | − 0.9 | n.s |
aPercentage of phenotypic variance explained by the QTL
bLOD (logarithm of the odds) above LOD threshold at the 0.05 level of probability obtained through a 1000-iteration permutation test
cBest estimated position for the QTL in cM on the consensus Map
dRange of the confidence interval position for the QTL
eStudent’s T tests results indicating when the tested parental effect is significantly different from the effect of the shared parent
p < 0.10
* p < 0.05
** p < 0.01
*** p < 0.001
n.s. nonsignificant