. 2020 Jan 20;133(2):457–477. doi: 10.1007/s00122-019-03476-0

Table 5.

Locations and estimates of QTL for FHB severity (AUDPC and WKS) on the cross-specific maps using cross-specific models run with the R/QTL package

Trait	Population	chr	Pos (cM)	Closest marker	Add^a	%PV^b	LOD^c	Range^d	Validity per year
AUDPC	T	2B	58	10517361\|F\|0-33:T > C-33:T > C	43.40	26.2	12.5	33.6	All years
WKS	T	2B	58	10517361\|F\|0-33:T > C-33:T > C	0.60	14.5	7.2	32.0	2014, 2017
AUDPC	T	3B	78	14479678\|F\|0-40:G > C-40:G > C	38.09	21.7	10.8	32.1	All years
WKS	T	3B	78	14479678\|F\|0-40:G > C-40:G > C	0.60	29.7	12.7	52.0	All years
AUDPC	AG	3B	39	gwm533	44.04	14.0	4.8	72.4	All years
WKS	AG	3B	39	gwm533	0.48	14.1	5.1	52.0	All years
AUDPC	AG	5R	19	Xiac129	50.42	27.6	8.5	14.0	All years
WKS	AG	5R	19	Xiac129	0.57	30.2	9.6	8.0	All years
AUDPC	T	6A	40	3605407\|F\|0-32:G > A-32:G > A	7.39	10.2	5.8	72.9	All years
AUDPC	T	2B x 6A	–	–	–	6.7	4.0	–	2016
WKS	T	6B	29.3	3619611\|F\|0-12:A > G-12:A > G	− 0.19	7.5	4	24.4	2015, 2017
AUDPC	E	6B	114	4369576\|F\|0-15:G > T-15:G > T	− 23.09	14.9	3.8	136.0	All years
AUDPC	E	7A	198	8514068	24.64	18.9	4.7	12.0	All years
WKS	E	7A	198	8514068	0.33	19.6	4.4	26.0	All years
AUDPC	T	7B	16	3043611\|F\|0-39:T > C-39:T > C	31.09	16.3	8.6	80.0	All years
AUDPC	T	3B x 7B	–	–	–	12.2	6.8	–	All years
WKS	T	7B	16	3043611\|F\|0-39:T > C-39:T > C	0.32	8.3	4.4	82.0	2017
WKS	T	3B x 7B	–	–	–	7.2	3.9	–	2017

^aPositive additive effects denote trait-increasing effect of the G8.06 allele; additive effects were estimated as half the difference between phenotype averages for the homozygotes

^bPercentage of phenotypic variance explained by the QTL

^cLOD (logarithm of the odds) above LOD threshold at the 0.05 level of probability obtained through a 1000-iteration permutation test

^dRange of the confidence interval position for the QTL