Table 1.
The comparative statistics of the chloroplast genome assembly of S.polyrhiza 7498 generated from long reads of PacBio and short reads of SOLiD platform
| Category | PacBio | SOLiD |
|---|---|---|
| Number of selected readsa | 239,086 | 19,906,092 |
| Total nucleotides (selected data) (bp)a | 2,579,414,638 | 995,304,600 |
| Mean read length (selected data) (bp)a | 10,789 | 50 |
| Number of scaffolds | 1 | 3 |
| Number of genome gaps | 0 | 52 |
| Total genome coverage | 7837 | 5474 |
| Genome Size (bp) | 168,956 | 168,788 |
| LSC (bp) | 91,210 | 91,222 |
| SSC (bp) | 14,058 | 14,056 |
| IR (bp) | 31,844 | 31,755 |
| GC content (%) | 35.68 | 35.69 |
| GenBank ID | MN419335 | JN160603 |
aOnly the selected chloroplast-related PacBio reads and SOLiD reads are counted