Table 3.
The defined operons in SpV2
| Operon | Genes | Functions | Length | Genome Position |
|---|---|---|---|---|
| Atp_1 | atpI+atpH+atpF+atpA | ATP synthase | 5,758 | 17,612-12,186 |
| Atp_2 | atpB+atpE | ATP synthase | 2,141 | 60,381-58,481 |
| Psb_1 | psbD+psbC+psbZ | PSII | 3,398 | 37,462-40,616 |
| Psb_2 | psbB+psbT+psbH+petB+petD | PSII; Cytochrome complex | 5,689 | 78,885-84,218 |
| Psa | psaA+psaB | PSI | 4,818 | 46,372-41,890 |
| Ndh | rps15+ndhH+ndhA+ndhI | NADH dehydrogenase | 4,611 | 137,464-133,111 |
| Rpl_1 | rpl23+rpl2+rps19 | Ribosomal proteins | 2,319 | 92,997-90,876 |
| Rpo | rpoB+rpoC1+rpoC2+rps2 | RNA polymerase; Ribosomal protein | 11,837 | 29,112-17,867 |
| Rpl_2 | rpl22+rps3+rpl16+rpl14+rps8 +rpl36+rps11+rpoA | Ribosomal proteins | 6,257 | 90,586-84,434 |
aThe length of operon is counted in bp. The column of operon is named with the abbreviation of gene family. The connections of genes are indicated by a plus sign. The gene order in the operon is based on the full-length transcript. Genome Position means the location of operon in the new version of S.polyrhiza 7498 chloroplast genome. PSII means photosystem II and PSI is photosystem I