TABLE 1.
Peptide | Gene | Primer name | Primers (5′–3′) | Tm (°C) | bp |
Surfactin | srfAA | srfAA-F | TCGGGACAGGAAGACATCAT | 60 | 201 |
srfAA-R | CCACTCAAACGGATAATCCTGA | ||||
Fengycin | fenB | fenB-F | CTATAGTTTGTTGACGGCTC | 55 | 1400 |
fenB-R | CAGCACTGGTTCTTGTCGCA | ||||
fenD | fenD-F | GGCCCGTTCTCTAAATCCAT | 60 | 269 | |
fenD-R | GTCATGCTGACGAGAGCAAA | ||||
Iturin | ITUDI | ITUDI-F | GATGCGATCTCCTTGGATGT | 59 | 650 |
ITUDI-R | ATCGTCATGTGCTGCTTGAG | ||||
ituD | ituD-F | TTGAAYGTCAGYGCSCCTTT | 58 | 482 | |
ituD-R | TGCGMAAATAATGGSGTCGT | ||||
ituA | ituA-F | ATGAAAATTTACGGAGTATATATG | 53 | 1150 | |
ituA-R | TTATAACAGCTCTTCATACGTT | ||||
ituC | ituC-F | GGCTGCTGCAGATGCTTTAT | 60 | 423 | |
ituC-R | TCGCAGATAATCGCAGTGAG | ||||
Mycosubtilin | mycB | mycB-F | ATGTCGGTGTTTAAAAATCAAGTAACG | 60 | 2024 |
mycB-R | TTAGGACGCCAGCAGTTCTTCTATTGA | ||||
Bacillomycin | bmyB | bmyB-F | GAATCCCGTTGTTCTCCAAA | 60 | 370 |
bmyB-R | GCGGGTATTGAATGCTTGTT | ||||
bmyD | bmyD-F | TTGAAYGTCAGYGCSCCTTT | 51 | 482 | |
bmyD-R | TGCGMAAATAATGGSGTCGT | ||||
Bacilysin | BACD | BACD-F | AAAAACAGTATTGGTYATCGCTGA | 52 | 749 |
BACD-R | CCATGATGCCTTCKATRCTGAT | ||||
BACAB | BACAB-F | CTTCTCCAAGGGGTGAACAG | 61 | 815 | |
BACAB-R | TGTAGGTTTCACCGGCTTTC | ||||
BAC | BAC-F | CAGCTCATGGGAATGCTTTT | 60 | 498 | |
BAC-R | CTCGGTCCTGAAGGGACAAG | ||||
Flagellin | hag | hag-F | ATGAGAATCAACCACAATATCGC | 54 | 1210 |
hag-R | TTAACCTTTAAGCAATTGAAGAA | ||||
Antimicrobial component | tasA | tasA-F | ATGGGTATGAAAAAGAAATTAAG | 52 | 786 |
tasA-R | TTAGTTTTTATCCTCACTGTGA |