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. Author manuscript; available in PMC: 2020 Jan 28.
Published in final edited form as: Conf Proc IEEE Eng Med Biol Soc. 2019 Jul;2019:1350–1354. doi: 10.1109/EMBC.2019.8856576

Molecules included for pathway and network analysis based on statistical and identification filters.

Transcriptomics Metabolomics Glycoproteomics
miRNA -Seq mRNA -Seq GC-MS LC-X1S (POS+NEG) LC-MS
Comparisons Total Detected FDR <0.05 Total Detected FDR <0.05 miRNA-mRNA pairs Total Detected Compounds with ID FDR <0.05a Total Detected FDR <0.05 PubChem CIDb Total Detected FDR <0.05
Tissue 2548 344 11313 500 1294 728 250 58 2881 555 255
Serum 579 149 66 2596 1592 639 19 2
a

number of metabolites with an ID that are also FDR <0.05

b

Number of metabolites with FDR<0.05 and at least one putative identification with PubChemID