. 2019 Dec 10;98(1):skz372. doi: 10.1093/jas/skz372

Table 7.

Ileal and colonic microbiota populations (% of sequences) of weanling pigs as measured using Illumina sequencing

Phyla	Genera	Ileum	Colon
Euryarchaeota		0.00 ± 0.03^b	0.11 ± 0.03^a
	Methanobrevibacter	0.00 ± 0.02	0.05 ± 0.02
	vadinCA11	0.00 ± 0.01^b	0.05 ± 0.01^a
Actinobacteria		5.26 ± 1.01^a	1.08 ± 1.01^b
	Actinomyces	0.03 ± 0.00^a	0.00 ± 0.00^b
	Undefined genus in family Bifidobacteriaceae	0.38 ± 0.12	0.02 ± 0.12
	Bifidobacterium	4.48 ± 0.85^a	0.68 ± 0.86^b
	Undefined genus in family Coriobacteriaceae	0.37 ± 0.16	0.24 ± 0.16
	Collinsella	0.00 ± 0.01^b	0.11 ± 0.01^a
Bacteroidetes		0.01 ± 1.04^b	24.48 ± 1.04^a
	Undefined genus in order Bacteroidales	0.00 ± 0.04^b	0.17 ± 0.04^a
	Parabacteroides	0.00 ± 0.02	0.04 ± 0.02
	Prevotella	0.01 ± 0.93^b	20.89 ± 0.93^a
	Undefined genus in family RF16	0.00 ± 0.02	0.03 ± 0.02
	Undefined genus in family S24-7	0.00 ± 0.06^b	0.36 ± 0.06^a
	Undefined genus in family [Paraprevotellaceae]	0.00 ± 0.00^b	0.03 ± 0.00^a
	CF231	0.00 ± 0.04^b	0.26 ± 0.04^a
	[Prevotella]	0.00 ± 0.30^b	2.69 ± 0.30^a
Cyanobacteria		0.00 ± 0.31^b	2.07 ± 0.31^a
	Undefined genus in order YS2	0.00 ± 0.31^b	2.06 ± 0.31^a
Firmicutes		89.43 ± 2.38^a	68.58 ± 2.38^b
	Undefined genus in family Planococcaceae	0.04 ± 0.03	0.00 ± 0.03
	Aerococcus	0.64 ± 0.41	0.00 ± 0.41
	Granulicatella	0.03 ± 0.02	0.00 ± 0.02
	Enterococcus	2.39 ± 1.16	0.00 ± 1.16
	Undefined genus in family Lactobacillaceae	0.32 ± 0.22	0.00 ± 0.22
	Lactobacillus	33.08 ± 3.31^a	9.53 ± 3.32^b
	Pediococcus	0.79 ± 0.50	0.00 ± 0.50
	Weissella	3.33 ± 1.46	0.00 ± 1.46
	Streptococcus	29.95 ± 3.13^a	11.71 ± 3.16^b
	Turicibacter	0.02 ± 0.01^a	0.01 ± 0.01^b
	Undefined genus in order Clostridiales	0.58 ± 0.24^b	2.77 ± 0.24^a
	Undefined genus in family Clostridiaceae	10.96 ± 2.00^a	1.05 ± 2.01^b
	Clostridium	1.46 ± 0.52	0.29 ± 0.52
	SMB53	0.07 ± 0.03^a	0.02 ± 0.03^b
	Undefined genus in family Lachnospiraceae	0.09 ± 0.29^b	4.57 ± 0.29^a
	Blautia	0.01 ± 0.15^b	2.63 ± 0.15^a
	Coprococcus	0.00 ± 0.05^b	0.54 ± 0.05^a
	Dorea	0.00 ± 0.07^b	0.61 ± 0.07^a
	Lachnospira	0.00 ± 0.02^b	0.22 ± 0.02^a
	Roseburia	0.00 ± 0.22^b	1.91 ± 0.22^a
	[Ruminococcus]	0.00 ± 0.02^b	0.39 ± 0.02^a
	Peptococcus	0.00 ± 0.01^b	0.05 ± 0.01^a
	Undefined genus in family Peptostreptococcaceae	0.07 ± 0.02	0.09 ± 0.02
	Undefined genus in family Ruminococcaceae	0.02 ± 0.39^b	9.89 ± 0.39^a
	Faecalibacterium	0.00 ± 0.38^b	4.85 ± 0.38^a
	Oscillospira	0.00 ± 0.01^b	0.07 ± 0.01^a
	Ruminococcus	0.00 ± 0.02^b	0.27 ± 0.02^a
	Undefined genus in family Veillonellaceae	0.03 ± 0.26^b	2.89 ± 0.26^a
	Acidaminococcus	0.01 ± 0.06^b	0.56 ± 0.06^a
	Anaerovibrio	0.00 ± 0.07^b	0.34 ± 0.07^a
	Dialister	0.03 ± 0.14^b	1.39 ± 0.14^a
	Megasphaera	0.40 ± 0.50^b	8.02 ± 0.50^a
	Mitsuokella	0.13 ± 0.08^b	0.66 ± 0.08^a
	Phascolarctobacterium	0.00 ± 0.03^b	0.32 ± 0.03^a
	Veillonella	0.03 ± 0.01^a	0.01 ± 0.01^b
	Undefined genus in family Erysipelotrichaceae	0.00 ± 0.02^b	0.06 ± 0.02^a
	Bulleidia	0.01 ± 0.03^b	0.26 ± 0.03^a
	Catenibacterium	0.07 ± 0.14^b	1.26 ± 0.14^a
	Sharpea	0.34 ± 0.13	0.17 ± 0.13
	[Eubacterium]	0.01 ± 0.06^b	0.76 ± 0.06^a
Proteobacteria		5.29 ± 1.92	3.41 ± 1.92
	Undefined genus in order RF32	0.00 ± 0.02	0.06 ± 0.02
	Sutterella	0.00 ± 0.01^b	0.06 ± 0.01^a
	Undefined genus in order Tremblayales	0.00 ± 0.09	0.28 ± 0.09
	Desulfovibrio	0.00 ± 0.04^b	0.18 ± 0.04^a
	Campylobacter	0.00 ± 0.17^b	0.85 ± 0.17^a
	Helicobacter	0.00 ± 0.01^b	0.04 ± 0.01^a
	Succinivibrio	0.00 ± 0.49^b	1.88 ± 0.49^a
	Undefined genus in family Enterobacteriaceae	2.78 ± 1.60	0.00 ± 1.60
	Trabulsiella	0.18 ± 0.12	0.00 ± 0.12
	Undefined genus in family Pasteurellaceae	0.05 ± 0.02	0.00 ± 0.02
	Actinobacillus	2.19 ± 0.72	0.04 ± 0.72
Tenericutes		0.00 ± 0.03^b	0.22 ± 0.03^a
	Undefined genus in Phylum WPS-2	0.00 ± 0.02	0.03 ± 0.02

^abValues within a row not sharing the same superscript letter are different (P < 0.05).