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. Author manuscript; available in PMC: 2020 Jan 28.
Published in final edited form as: J Med Chem. 2020 Jan 7;63(2):656–675. doi: 10.1021/acs.jmedchem.9b01608

Table 1.

SAR Profile of Substituted Benzamide WDR5 WIN site inhibitors

graphic file with name nihms-1066405-t0002.jpg
compnd R1 = Kd (nM) TR-FRET HMT IC50 (nM) Cell Proliferation Assays GI50 (nM) Selectivity
WDR5 MLL1 MV4:11 Molml3 K562 K562/MV4:11
2 graphic file with name nihms-1066405-t0003.jpg 1.5 ±0.80 43.3 2300 ± 620 2000 ± 230 13000 ± 3000 5
3 graphic file with name nihms-1066405-t0004.jpg 0.50 ±0.010 55.0 2400 ± 660 2700 ± 440 18000 ±6300 7
4 graphic file with name nihms-1066405-t0005.jpg 0.14 ±0.065 14.0 870 ± 320 840 ± 93 6400 ±1400 7
5 graphic file with name nihms-1066405-t0006.jpg 0.16 ±0.026 9.9 820 ± 400 970 ± 400 15000 ±850 18
6 graphic file with name nihms-1066405-t0007.jpg 16 ± 14 >3000 13000±1300 7600 ± 460 28000 ± 2400 2
7 graphic file with name nihms-1066405-t0008.jpg 0.030 ±0.014 3.4 390 ±150 390 ± 52 3600 ±1100 9
8 graphic file with name nihms-1066405-t0009.jpg 0.090 ± 0.002 28.4 1300±190 1500 ±220 10000 ± 3400 8
9 graphic file with name nihms-1066405-t0010.jpg 0.032 ± 0.005 11.6 360 ± 200 405 ± 83 7600±1500 21
10 graphic file with name nihms-1066405-t0011.jpg 0.035 ± 0.002 8.6 240 ± 28 300 ± 49 12000 ± 3800 50
11 graphic file with name nihms-1066405-t0012.jpg 0.055 ± 0.021 23.9 340 ± 86 510 ±140 5900 ±1200 17
12 graphic file with name nihms-1066405-t0013.jpg 0.061 ± 0.023 3.4 490 ± 25 580 ±170 4900 ± 940 10
13 graphic file with name nihms-1066405-t0014.jpg 0.049 ± 0.008 3.4 470 ± 25 480 ±110 15000 ± 3600 32
a

TR-FRET Ki, and cell proliferation GI50 values represent four independent replicate determinations ± the standard deviation.

b

Histone methyltransferase inhibition (HMT) IC50 values represent two independent replicate determinations.

c

Selectivity is defined as GI50, K562/GI50, MV4:11.