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. 2020 Jan 22;10:2986. doi: 10.3389/fmicb.2019.02986

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Copyright © 2020 Gaytán, Sánchez-Reyes, Burelo, Vargas-Suárez, Liachko, Press, Sullivan, Cruz-Gómez and Loza-Tavera.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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Maximum likelihood phylogeny for taxonomic delimitation of the deconvoluted genomes from the BP8 metagenome. The analysis was performed with three phylogenetic markers: ribosomal protein L3, ribosomal protein S5 and DNA gyrase A subunit, which generated similar results. The analysis for ribosomal protein L3 is presented. Branch support values are indicated in the corresponding nodes. Bar indicates the number of expected substitutions per site under the WAG + G model. A sequence of Ruminococcus albus (Firmicutes) was used as outgroup. Key genome clusters are highlighted in bold and different Phyla are indicated at the left. Sequences for L3 ribosomal proteins of the deconvoluted genomes are accessible in the NCBI GenBank under accession numbers RQP07704.1, RQP15098.1, RQP16503.1, RQP08603.1, and RQP16393.1 for clusters 1–5, respectively.