Table 1.
Primer pairs used in this work.
| Gene name | Primer name | Primer pair name - in this work | Primer scheme name | Sequence (5′ - 3′) | Amplicon length (bp) | Reference |
|---|---|---|---|---|---|---|
| infB | infB729-F | infB-1 | MLST6, MLST8 | CCTGCCGGAAGAGTGG | 50 | Andersson et al. 2012 |
| infB729-R | MLST6, MLST8 | TCGCGGAAACGTGGAC | Andersson et al. 2012 | |||
| mdh | mdh1197-F | mdh-1 | MLST6, MLST8 | ATTGCCGACCTGACTAAACG | 58 | Andersson et al. 2012 |
| mdh1197 R | MLST6, MLST8 | CTTTCGCTTCCACGACTTC | Andersson et al. 2012 | |||
| phoE | phoE2013-F | phoE-1 | MLST6, MLST8 | GAAGGGGTGGGGAGTGA | 78 | Andersson et al. 2012 |
| phoE2013-R | MLST6, MLST8 | GGCGTTCATGTTTTTGTTGA | Andersson et al. 2012 | |||
| rpoB | rpoB2227-F | rpoB-1 | MLST6, MLST8 | TGATTAACTCCCTGTCCGTGT | 132 | Andersson et al. 2012 |
| rpoB2227-R | MLST6, MLST8 | CGTAGTTGCCTTCTTCGATAGC | Andersson et al. 2012 | |||
| tonB | tonB2693-F | tonB-1 | MLST6, MLST8 | GTTGAACCCGAACCTGAGC | 101 | Andersson et al. 2012 |
| tonB2693-R | MLST6, MLST8 | GGTTTGGGCTTCGGCTTA | Andersson et al. 2012 | |||
| tonB | tonB2886-F | tonB-2 | MLST6, MLST8 | AAAAGGTTGAACAGCCGAAG | 120 | Andersson et al. 2012 |
| tonB2886-R | MLST6, MLST8 | CCGCTGCTGTCGAGGT | Andersson et al. 2012 | |||
| gapA | gapA_F | gapA-1 | MLST8 | AAAGTCGTTCTGACTGGC | 95 | This work |
| gapA_R | MLST8 | TTRAAACGATGTCCTGGC | This work | |||
| pgi | pgi_F | pgi-1 | MLST8 | CCAAAATGGTACCGTGCGATT | 156 | This work |
| pgi_R | MLST8 | CCTGATCGCGRTATTCCTGCT | This work | |||
| wzi | wzi3_F | wzi-3 | wzi | GCTTAYGCRGCYGGGTTAGTRGT | 114 | This work |
| wzi3_R | wzi | GGCCASGTCGACARGCTCAG | This work | |||
| wzi | wzi4_F | wzi-4 | wzi | GCCGCTRAGYCAGGAAGAGAT | 101 | This work |
| wzi4_R | wzi | GACTGTCWGCBTTRAAAGCSGA | This work |