Table 3.
List of sequences taken from databases for in silico comparison analysis
| S. no. | Genotype | Species | Source | Position on reference genome |
|---|---|---|---|---|
| 1. | Brachypodium | Brachypodium distachyon | Phytozome v12 | Chr1:8277049..8281449 on Bd21-3_v1.1 |
| 2. | Coix | Coix lacryma-jobi | FJ487449.1 | – |
| 3. | Hordeum | Hordeum vulgare | Ensembl | Chr4:17,597,800..17,602,200 on IBSC_v2 |
| 4. | Oryza | Oryza sativa | IRGSC_Ensembl | Chr3:28427500..28431000 on IRGSP-1.0 |
| 5. | Pennisetum | Pennisetum glaucum | EF694124.2 | – |
| 6. | Sorghum | Sorghum bicolor | Ensembl | Chr1:9,465,750–9,471,250 on Sb_NCBIv3 |
| 7. | Setaria | Setaria italica | Ensembl | Chr9:7,677,500..7,681,500 on Si_v2.0 |
| 8. | Triticum_A | Triticum aestivum | IWGSC_Ensembl | Chr4A:582,837,800–582,842,200 on IWGSC |
| 9. | Triticum_B | Triticum aestivum | IWGSC_Ensembl | Chr4B:30,360,322–30,364,227 on IWGSC |
| 10. | Triticum_D | Triticum aestivum | IWGSC_Ensembl | Chr4D:18,462,728–18,466,728 on IWGSC |
| 11. | Zm_B73 | Zea mays ssp. mays | MaizeGDB | Chr1:270552500..270556000 on B73 RefGen_v4 |
| 12. | Zm_PalameroT* | Zea mays ssp. mays | MaizeGDB | AECO01001281.1 |
| 13. | Zm_ParB73 | Zea mays ssp. mays | MaizeGDB | Chr5:122942600..122946600 on B73 RefGen_v4 |
| 14. | Zm_CML247 | Zea mays ssp. mays | MaizeGDB | Chr1:277608178..277612178 on CML247 |
| 15. | Zm_Mo17 | Zea mays ssp. mays | MaizeGDB | Chr1:270000530..270004530 on MO17 |