Table 1.

Summary of reads quality control.

Sample	Raw_Reads	Valid_Reads	Valid%	Q20%	Q30%	GC%
FT_LCG_IP	65964582	56434060	72.94	97.96	94.67	54.54
CT_LCG_IP	68530268	60393976	66.49	96.96	92.27	54.38
FT_LCG_input	65680810	57014334	71.84	98.23	95.35	56.29
CT_LCG_input	75067398	64832184	62.20	97.20	92.94	55.53