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. 2020 Jan 28;3(2):e201900356. doi: 10.26508/lsa.201900356

Key Resources Table.

Reagent or resource Source Identifier
Antibodies
Mouse anti-B-tubulin MAb E7 Developmental Studies Hybridoma Bank RRID:AB_528499
Mouse anti-phospho-SAPK/JNK (Thr183/Tyr185) MAb G9 Cell Signalling Technology RRID:AB_2307321
Rabbit anti-dFOXO Michael Marr BRD10
Cy3-conjugated AffiniPure goat anti-rabbit antibody Jackson ImmunoResearch Cat. no. 111-167-003
FITC-conjugated AffiniPure donkey anti-mouse antibody Jackson ImmunoResearch Cat. no. 715-095-151
Anti-rabbit HRP-conjugated IgG (H+L) GE Healthcare
Anti-mouse HRP-conjugated IgG (H+L) GE Healthcare
Rat monoclonal anti-HA-tag [7C9] ChromoTek
Deposited data
Agilent microarray data This article Array express: E-MTAB-6253
Experimental models: organisms/strains
Drosophila melanogaster: Schneider 2, CVCL_Z232 Invitrogen RRID: CVCL_Z232
Homo sapiens: HeLa CCL-2 American Type Culture Collection (ATCC) RRID: CVCL_0030
D. melanogaster: hopTum Bloomington Drosophila Stock Center RRID: BDSC_8492
D. melanogaster: w1118 Bloomington Drosophila Stock Center RRID: BDSC_5905
D. melanogaster: w1118; foxoΔ94/TM6B, Tb1 Bloomington Drosophila Stock Center RRID: BDSC_42220
D. melanogaster: w1118 P{w+mC=UAS-bsk.DN}2 Bloomington Drosophila Stock Center RRID: BDSC_6409
D. melanogaster: bsk1 cn1 bw1 sp1/CyO, Bloomington Drosophila Stock Center RRID: BDSC_3088
D. melanogaster: w*; cno3 P{ry+t7.2=A92}pucE69/TM6B, P{w+mC=iab-2(1.7)lacZ}6B, Tb1 Bloomington Drosophila Stock Center RRID: DGGR_109029
D. melanogaster: w1118; P{GD10555}v3413 UAS-bskRNAi Bloomington Drosophila Stock Center RRID:FlyBase_FBst0460476
D. melanogaster: w1118; P{GAL4}fat (FB-GAL4) Gronke et al (2003) RRID:FlyBase_FBti0013267
D. melanogaster: w1118; P{GD10555}v3413 UAS-bskRNAi Bloomington Drosophila Stock Center RRID:FlyBase_FBst0460476
D. melanogaster: y1 w67c23; P{EPgy2}PxtEY03052 Bloomington Drosophila Stock Center RRID:BDSC_15620
D. melanogaster: PBac{WH}Pxtf05258 The Exelixis Collection at the Harvard Medical School RRID: FBti0067872
D. melanogaster: dfoxo-v3-mCherry Kakanj et al (2016) N/A
Beauveria bassiana  CABI (T. Petch, 1947) IMI: 12942
Oligonucleotides
foxo-ChIP-control forward primer (5′-AGCCCGCGAAGATACAAGAG-3′) This article N/A
foxo-ChIP-control reverse primer (5′-AGCCACAAACAGCGACAGAA-3′) This article N/A
pdcd4-ChIP forward primer (5′-CCGTTGGGAGTCTCTCTCTC-3′) This article N/A
pdcd4-ChIP reverse primer (5′-GCTCTCCCCACCTTCTCACC-3′) This article N/A
hsp26-ChIP forward primer (5′-GTGCGCCTGTATGAGTGAGA-3′) This article N/A
hsp26-ChIP reverse primer (5′-GTGGGAGATTGCTGGCGTTA-3′) This article N/A
4EBP-ChIP forward primer (5′-CAAGAACCAGCCGGTTTGTC-3′) This article N/A
4EBP-ChIP reverse primer (5′-GCTCTCTTCTCGCTCTTTCG-3′) This article N/A
Pxt-RT-PCR forward primer (5′-GCAGCTCCTCGATGTGATTGAAAC-3′) This article N/A
Pxt-RT-PCR reverse primer (5′-CTAGAGTGCGAGCGAGAGGTAAGA-3′) This article N/A
RpL32-RT-PCR forward primer (5′-ATCCGCCACCAGTCGCATCGATATGCTAAG-3′) This article N/A
RpL32-RT-PCR reverse primer (5′-TCTTGAGAACGCAGGCGACCGTTGGGGTTG-3′) This article N/A
DptA-RT-PCR forward primer (5′-GCAGTTCACCATTGCCGTCGCCTTACTTTG-3′) This article N/A
DptA-RT-PCR reverse primer (5′-TGAAGATTGAGTGGGTACTGCGGTGGTGGA-3′) This article N/A
Drs-RT-PCR forward primer (5′-ATCAAGTACTTGTTCGCCCTCTTCGCTGTC-3′) This article N/A
Drs-RT-PCR reverse primer (5′-CTCGTTGTCCCAGACGGCACAGGGACCCTT-3′) This article N/A
Recombinant DNA
Plasmid: pTRE3G Clontech 631173
pTRE3G-3XFLAG This article N/A
pTRE3G-3XFLAG-Pxn This article N/A
Software and algorithms
FIJI Schindelin et al (2012) https://imagej.net/Fiji
Marray Paquet (2009) https://bioconductor.org/packages/release/bioc/html/marray.html
Limma Ritchie et al (2015) http://bioconductor.org/packages/release/bioc/html/limma.html
Bioconductor version 3.4 http://bioconductor.org https://bioconductor.org/news/bioc_3_4_release/
R version 3.1.2 https://www.R-project.org https://cran.r-project.org/bin/windows/base/old/3.1.2/
ClueGo (Bindea et al, 2009) https://apps.cytoscape.org/apps/cluego
esyN (Bean et al, 2014) http://www.esyn.org
Cytoscape (Shannon et al, 2003) https://cytoscape.org
iRegulon (Janky et al, 2014) http://iregulon.aertslab.org