Table 3.
Adaptive immunity
| Gene | NEME annotation | Contig annotation | Start | End | Strand |
|---|---|---|---|---|---|
| CIITA | NEME_493 | Contig_2585 | 3,985,719 | 3,993,128 | Antisense |
| AICDA | NEME_58 | Contig_447 | 597,424 | 599,014 | Sense |
| AIRE | NEME_9 | Contig_79 | 14,106,230 | 14,113,573 | Antisense |
| B2M | NEME_421 | Contig_2242 | 363,050 | 363,352 | Antisense |
| B2M_pseudo | NEME_421 | Contig_2242 | 368,352 | 368,721 | Antisense |
| CD4 | NEME_213 | Contig_1334 | 340,445 | 348,248 | Sense |
| CD74 | NEME_71 | Contig_593 | 791,743 | 796,652 | Antisense |
| CD8a | NEME_729 | Contig_3231 | 634,222 | 648,487 | Antisense |
| CD8b | NEME_729 | Contig_3231 | 656,030 | 660,462 | Antisense |
| RAG1 | NEME_106 | Contig_787 | 4,690,414 | 4,695,142 | Sense |
| RAG2 | NEME_106 | Contig_787 | 4,699,042 | 4,700,651 | Antisense |
| TAP1 | NEME_582 | Contig_2864 | 694,776 | 722,339 | Sense |
| TAP2 | NEME_387 | Contig_2107 | 2,987,106 | 2,993,287 | Antisense |
| TAP2T | NEME_299 | Contig_1786 | 3,697,645 | 3,704,089 | Sense |
| Tapasin | NEME_387 | Contig_2107 | 3,111,989 | 3,119,308 | Sense |
Overview of manually annotated key adaptive immune genes