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. Author manuscript; available in PMC: 2020 Jan 29.
Published in final edited form as: Nature. 2018 Jul 25;560(7716):122–127. doi: 10.1038/s41586-018-0362-1

Extended Data Table 4. Primers used in this study. (A) Primers used to amplify CRISPR-Cas9 target loci in edited cell-lines. (B) Locus-specific ChIP amplicon qPCR primer sequences.

a
Target/gene locus Primer Sequence (5’-3’)
Rpp30 Fwd TCCAGTGTGCAAGAAAGCTAAATG
Rev GGCAGTGCGTGGAGACTCA
A (Igh S µ) Fwd CAATGTGGTTTAATGAATTTGAAGTTGCCA
Rev TCTCACACTCACCTTGGATCTAAGCACTGT
B (Igh S µ) Fwd GCTAAACTGAGGTGATTACTCTGAGGTAAG
Rev GTTTAGCTTAGCGGCCCAGCTCATTCCAGT
C (Igh Sγ1) Fwd AGTGTGGGAACCCAGTCAAA
Rev GTACTCTCACCGGGATCAGC
D (Igh S α) Fwd TGAAAAGACTTTGGATGAAATGTGAACCAA
Rev GATACTAGGTTGCATGGCTCCATTCACACA
b
Target gene sgRNA Sequence (5’-3’)
C20orf196 / Shld1 1 Fwd AGTAGCTGCTCTTTTGGCGT
Rev TGGCAGCAGAAAGAGAAGGG
2 Fwd AGTAGCTGCTCTTTTGGCGT
Rev TGGCAGCAGAAAGAGAAGGG
Fam35a / Shld3 1 Fwd AGCCCACACATTTGTCCACT
Rev GCTCCAGTTGCTCCACTGAA
2 Fwd TCCTTGGCTTCTTGGACACC
Rev ATGGAGGCAGAACCAACAGG
3 Fwd TGACCTTGAGCCTGTTCCAC
Rev TGGAGTTGGAGCAGTTGCAG
Flj26957 / Shld3 1 Fwd TACTGCTTCACGCTCTCAGC
Rev GCAGGCTGTCCCTACCAAAT
2 Fwd TACTGCTTCACGCTCTCAGC
Rev GCAGGCTGTCCCTACCAAAT