Extended Data Table 4. Primers used in this study. (A) Primers used to amplify CRISPR-Cas9 target loci in edited cell-lines. (B) Locus-specific ChIP amplicon qPCR primer sequences.
a | |||
---|---|---|---|
Target/gene locus | Primer Sequence (5’-3’) | ||
Rpp30 | Fwd | TCCAGTGTGCAAGAAAGCTAAATG | |
Rev | GGCAGTGCGTGGAGACTCA | ||
A (Igh S µ) | Fwd | CAATGTGGTTTAATGAATTTGAAGTTGCCA | |
Rev | TCTCACACTCACCTTGGATCTAAGCACTGT | ||
B (Igh S µ) | Fwd | GCTAAACTGAGGTGATTACTCTGAGGTAAG | |
Rev | GTTTAGCTTAGCGGCCCAGCTCATTCCAGT | ||
C (Igh Sγ1) | Fwd | AGTGTGGGAACCCAGTCAAA | |
Rev | GTACTCTCACCGGGATCAGC | ||
D (Igh S α) | Fwd | TGAAAAGACTTTGGATGAAATGTGAACCAA | |
Rev | GATACTAGGTTGCATGGCTCCATTCACACA |
b | |||
Target gene | sgRNA | Sequence (5’-3’) | |
C20orf196 / Shld1 | 1 | Fwd | AGTAGCTGCTCTTTTGGCGT |
Rev | TGGCAGCAGAAAGAGAAGGG | ||
2 | Fwd | AGTAGCTGCTCTTTTGGCGT | |
Rev | TGGCAGCAGAAAGAGAAGGG | ||
Fam35a / Shld3 | 1 | Fwd | AGCCCACACATTTGTCCACT |
Rev | GCTCCAGTTGCTCCACTGAA | ||
2 | Fwd | TCCTTGGCTTCTTGGACACC | |
Rev | ATGGAGGCAGAACCAACAGG | ||
3 | Fwd | TGACCTTGAGCCTGTTCCAC | |
Rev | TGGAGTTGGAGCAGTTGCAG | ||
Flj26957 / Shld3 | 1 | Fwd | TACTGCTTCACGCTCTCAGC |
Rev | GCAGGCTGTCCCTACCAAAT | ||
2 | Fwd | TACTGCTTCACGCTCTCAGC | |
Rev | GCAGGCTGTCCCTACCAAAT |