TABLE 4.

Identification of CDC regions in the A. alternata Asian pear pathotype reference genome.

FERA 650 contig	Length (bp)	A. gaisen	A. tenuissima								A. arborescens
		Pear	Apple				–				–
		FERA	FERA	FERA	FERA	FERA	FERA	FERA	FERA	FERA	FERA	RGR	RGR
		650	1166	635	743	1177	648	1082	1164	24350	675	97.0013	97.0016
1	6257968	35	43	25	38	58	50	20	28	35	33	34	26
2	2925786	35	45	25	39	58	51	20	28	35	34	35	26
3	2776589	35	44	26	39	58	51	20	28	35	34	35	26
4	2321443	35	45	26	39	58	51	20	28	35	34	35	27
5	2116911	35	46	26	40	59	52	21	29	36	35	36	27
6	2110033	35	44	25	39	58	51	20	28	35	33	35	26
7	1975041	35	42	25	38	56	50	19	27	34	33	34	26
8	1822907	35	43	25	39	58	51	20	28	35	33	35	26
9	1811374	34	42	25	38	57	49	19	27	34	32	34	25
10	1696734	34	42	25	38	56	50	19	27	34	32	34	26
11	1617057	35	43	25	38	57	50	19	27	34	33	34	26
12	1416541	35	47	26	40	60	53	21	29	36	35	36	27
13	1110254	35	39	24	36	55	48	19	26	33	31	32	24
14 (CDC)	629968	68	49	21	41	202	0	0	0	0	0	0	0
15	554254	34	40	24	37	56	48	19	27	33	32	33	25
16 (CDC)	547262	34	8	13	18	22	20	5	14	11	8	8	6
17	522351	35	37	23	35	55	47	18	26	33	31	33	24
18	463030	34	30	22	33	49	44	17	24	29	25	28	21
19	353531	34	30	21	34	49	43	16	23	30	26	28	21
20	350965	34	20	18	27	45	40	15	19	26	22	20	18
21	313768	35	24	19	29	46	38	15	22	27	25	28	19
22	288922	33	35	23	35	51	44	21	24	31	28	30	22
23 (CDC)	206183	34	1	3	5	43	0	0	10	1	0	0	0
24 (CDC)	89891	70	0	0	0	0	0	0	0	0	0	0	0
25	25201	16	0	0	0	0	0	0	0	0	0	0	0
26	23394	5	0	0	0	0	0	0	0	0	0	0	0
27	19592	17	0	0	0	0	0	0	0	0	0	0	0

Read depth is shown from illumina reads against each contig, by isolate Contigs showing reductions in coverage from non-pathotype isolates were identified as regions of conditionally dispensable chromosomes (CDCs).