TABLE 5.
Genomic location (contig number) of homologs to genes from apple, pear, strawberry, tangerine, rough lemon, and tomato toxin gene clusters.
| Pathotype | Gene | NCBI Accession | Group | FERA 635 | FERA 743 | FERA 1166 | FERA 1177 | FERA 650 |
| Apple | AMT1 | AB525198 | 201,224 | 146,160 | 20, 21 | 81 | ||
| AMT2 | AB525198 | a | 224 | 160 | 20, 21 | 81 | ||
| AMT3 | AB525198 | 224 | 160 | 21 | 81 | |||
| AMT4 | AB525198 | 178 | 140 | 20, 21 | 81 | |||
| AMT5 | AB525198 | 178 | 140 | 20, 21 | 81 | |||
| AMT6 | AB525198 | 178 | 140 | 20, 21 | 81 | |||
| AMT7 | AB525198 | 178 | 140 | 20, 21 | 81 | |||
| AMT8 | AB525198 | 178 | 140 | 20, 21 | 81 | |||
| AMT9 | AB525198 | 178 | 140 | 20, 21 | 81 | |||
| AMT10 | AB525198 | 178 | 143 | 20 | 81 | |||
| AMT11 | AB525198 | 199* | 144* | 21* | 81* | |||
| AMT12 | AB525198 | 199 | 144 | 20 | 129 | |||
| AMT13 | AB525198 | 200 | 129 | 20 | 128 | |||
| AMT14 | AB525198 | 200 | 129 | 20 | 128 | 14 | ||
| AMT15 | AB525198 | 18** | 14* | |||||
| AMT16 | AB525198 | 200, 12 | 129, 13 | 20, 7 | 128, 21 | 12 | ||
| AMTR1 | AB525198 | 230 | 143 | 20 | 81 | 14 | ||
| Pear | AKT1 | AB015351 | b | 14, 24 | ||||
| AKT2 | AB015352 | c | 14 | |||||
| AKT3 | AB035492 | d | 14, 24 | |||||
| AKTR | AB035491 | e | 14, 24 | |||||
| Strawberry | AFT1-1 | AB070711 | b | 14, 24 | ||||
| AFT3-1 | AB070713 | d | 14, 24 | |||||
| AFT3-2 | AB179766 | d | 14, 24 | |||||
| AFT9-1 | AB179766 | 14, 24 | ||||||
| AFT10-1 | AB179766 | 14, 24 | ||||||
| AFT11-1 | AB179766 | 14, 24 | ||||||
| AFT12-1 | AB179766 | 24 | ||||||
| AFTS1 | AB119280 | a | 224 | 160 | 20, 21 | 81 | ||
| AFTR-1 | AB070712 | e | 14, 24 | |||||
| AFTR-2 | AB179766 | e | 14, 24 | |||||
| Tangerine | ACTT1 | AB034586 | b | 14, 24 | ||||
| ACTT2 | AB432914 | c | 14 | |||||
| ACTT3 | AB176941 | d | 14, 24 | |||||
| ACTTR | AB176941 | e | 14, 24 | |||||
| ACTT5 | AB444613 | 24 | ||||||
| ACTT6 | AB444614 | 14 | ||||||
| Rough Lemon | ACRTS1 | AB688098 | ||||||
| ACRTS2 | AB725683 | |||||||
| Tomato | ALT1 | AB465676 |
Results from reference genome isolates FERA 1166 and FERA 650 indicate toxin clusters are present in multiple copies within the genome. This is supported by identification of multiple AMT1 homologs in FERA 635 and FERA 743. Homology between query sequences is shown (homolog groups), as determined from reciprocal BLAST searches between queries. Homologs are identified by e-value < 1 × 10–30, >70% query alignment. *Marks lower-confidence hits with <70% query alignment.