TABLE 2.

Summary of significantly differentially expressed genes in response to furfural or carbon sources in short-term shock response experiment.

	cGene	cIGR	pGene	pIGR	Total	Note
Furfural regulated features
Gluc_15/0min-Up	24	9	0	0	33	Furfural regulated genes in RMG8 15 min post furfural shock, Supplementary Table S3-4.
Gluc_15/0min-Down	1	0	0	0	1
Gluc_60/0min-Up	26	7	2	0	35	Furfural regulated genes in RMG8 60 min post furfural shock, Supplementary Table S3-5.
Gluc_60/0min-Down	6	3	0	0	9
Xyl_15/0min-Up	3	0	0	0	3	Furfural regulated genes in RMX8 15 min post furfural shock, Supplementary Table S3-6.
Xyl_15/0min-Down	0	0	0	0	0
Xyl_60/0min-Up	15	5	0	0	20	Furfural regulated genes in RMX8 60 min post furfural shock, Supplementary Table S3-7.
Xyl_60/0min-Down	24	11	0	0	35
Carbon-source regulated features
Xyl/Gluc_0min_Up	99	53	1	0	153	Xylose regulated genes compared to glucose without furfural shock, Supplementary Table S3-9.
Xyl/Gluc_0min_Down	109	52	0	0	161
Xyl/Gluc_15min_Up	57	42	1	0	100	Xylose regulated genes compared to glucose 15 min post furfural shock, Supplementary Table S3-10.
Xyl/Gluc_15min_Down	68	32	1	0	101
Xyl/Gluc_60min_Up	61	47	2	0	110	Xylose regulated genes compared to glucose 60 min post furfural shock, Supplementary Table S3-11.
Xyl/Gluc_60min_Down	52	20	0	0	72

cGene, number of chromosomal genes; cIGR, number of chromosomal intergenic regions; pGene, number of plasmid genes; pIGR, number of plasmid intergenic regions. Total, total number of genetic features including cGene, cIGR, pGene, and pIGR for either up-regulated or down-regulated genetic features.