TABLE 3.

Summary of significantly differentially expressed genes in response to furfural or carbon sources in long-term stress response experiment.

	cGene	cIGR	pGene	pIGR	Total	Note
Furfural regulated genetic features
Gluc_Log_Fur/None-Up	30	16	0	1	47	Furfural regulated genes in RMG8 in the log phase, Supplementary Table S4.
Gluc_Log_Fur/None-Down	56	30	2	0	88
Xyl_Log_Fur/None-Up	23	20	6	9	58	Furfural regulated genes in RMX8 in the log phase, Supplementary Table S4.
Xyl_Log_Fur/None-Down	100	43	1	0	144
Growth-phase regulated genetic features
Gluc_Fur_Stat/Log-Up	191	137	75	46	449	Furfural regulated genes in RMG8 from log phase to stationary phase, Supplementary Table S4.
Gluc_Fur_Stat/Log-Down	275	147	0	0	422
Xyl_Fur_Stat/Log-Up	100	38	2	1	141	Furfural regulated genes in RMX8 from log phase to stationary phase, Supplementary Table S4.
Xyl_Fur_Stat/Log-Down	70	43	0	0	113

cGene, number of chromosomal genes; cIGR, number of chromosomal intergenic regions; pGene, number of plasmid genes; pIGR, number of plasmid intergenic regions. Total, total number of genetic features including cGene, cIGR, pGene, and pIGR for either up-regulated or down-regulated genetic features.