Table 6.

Results from SVM classification using id-itf and word embedding as features. Here, I denotes SVM with id-itf while W denotes SVM with word embedding. We calculate the average for each word embedding of individual tokens along the word embedding dimension so that each token will only have one mean value as its word embedding feature.

Phenotypes	Precision%		Recall%		ROCAUC%		F1%
	I	W	I	W	I	W	I	W
Adv. Cancer	92.10	67.97	36.02	16.87	67.84	58.02	50.83	26.39
	±2.86	±9.97	±3.70	±2.80	±1.85	±1.40	±4.15	±4.02
Adv. Heart Disease	90.08	19.21	20.74	18.87	60.10	51.46	33.48	18.93
	±3.49	±1.72	±1.33	±2.28	±0.67	±1.02	±1.86	±1.98
Adv. Lung Disease	86.66	37.29	10.22	12.05	55.07	55.05	17.98	17.89
	±1.83	±8.22	±1.82	±3.10	±0.90	±1.57	±3.03	±4.31
Chronic Neuro	84.91	25.90	20.40	24.42	59.63	51.82	32.55	24.99
	±3.37	±1.93	±1.66	±2.02	±0.88	±1.04	±2.34	±1.84
Chronic Pain	60.83	25.89	06.84	21.49	52.84	53.14	12.21	23.28
	±7.82	±1.69	±1.19	±2.05	±0.62	±0.89	±2.06	±1.80
Alcohol Abuse	95.23	17.81	35.76	13.86	67.77	52.58	51.82	15.38
	±2.43	±2.45	±2.23	±2.22	±1.16	±1.08	±2.67	±2.25
Substance Abuse	95.83	45.47	28.45	16.20	64.16	57.34	42.79	23.45
	±2.84	±8.12	±3.46	±4.04	±1.73	±2.03	±4.55	±5.33
Obesity	60.00	15.51	05.64	06.34	52.82	51.79	10.21	08.71
	±1.63	±4.67	±1.75	±2.39	±0.87	±1.20	±3.08	±2.97
Psychiatric Disorders	79.80	20.98	20.32	18.00	59.62	51.36	31.92	19.13
	±4.03	±2.19	±2.65	±2.25	±1.38	±1.14	±3.64	±2.07
Depression	77.52	31.63	22.86	30.86	60.15	51.82	35.10	31.06
	±4.21	±2.03	±1.97	±1.85	±1.11	±1.32	±2.72	±1.76