Table 3.
Hormone-regulated PR genesa
| Number of hormone-regulated DEGs | |||||
|---|---|---|---|---|---|
| PR Gene Family | SA | JA | SA/JA co-regulatedb | SA/JA reciprocally regulated | Number of hormone-responsive DEGs per PR family |
| 1 | 0 | 1 | 2 | 0 | 3 |
| 2 | 1 | 4 | 10 | 1 | 16 |
| 3 | 2 | 3 | 0 | 0 | 5 |
| 4 | 0 | 2 | 0 | 0 | 2 |
| 5 | 1 | 4 | 5 | 0 | 10 |
| 6 | 1 | 0 | 1 | 0 | 2 |
| 7 | 2 | 8 | 14 | 0 | 24 |
| 8 | 0 | 0 | 1 | 0 | 1 |
| 9 | 1 | 7 | 8 | 1 | 17 |
| 10 | 1 | 4 | 2 | 0 | 7 |
| 11 | 0 | 2 | 1 | 0 | 3 |
| 14 | 0 | 0 | 2 | 0 | 2 |
| 15/16 | 1 | 6 | 1 | 0 | 8 |
| 17 | 0 | 1 | 2 | 0 | 3 |
| Number of hormone-responsive DEGs across PR families | 10 | 42 | 49 | 2 | 103 |
aFor identities of hormone-regulated PR genes, see Additional file 8
bSA and JA co-regulated genes are defined as genes whose RNAs are either up- or down-regulated by both hormones