TABLE 4.
Number of conservative peaks obtained by IDR framework and percentage of nucleosome-free reads in conservative peaks.
| B. lanceolatum | ||||||||
| wt samples | 8 hpf | 15 hpf | 36 hpf | 60 hpf | ||||
| Number of peaks | 16,697 | 33,921 | 32,477 | 48,635 | ||||
| % reads in peaks | rep1 | rep2 | rep1 | rep2 | rep1 | rep2 | rep1 | rep2 |
| 10.54 | 14.45 | 29.38 | 44.24 | 26.32 | 29.31 | 50.66 | 49.12 | |
| C. intestinalis | ||||||||
| wt samples | 64 cells | 112 cells | Late gastrula | |||||
| Number of peaks | 6621 | 3882 | 10,652 | |||||
| % reads in peaks | rep1 | rep2 | rep1 | rep2 | rep1 | rep2 | ||
| 34.43 | 35.77 | 33.57 | 34.79 | 53.80 | 45.75 | |||
| P. mammillata | ||||||||
| 308 wt samples | 64 cells | 112 cells | Late gastrula | Mid neurula | ||||
| Number of peaks | 3594 | 3202 | 5985 | 6203 | ||||
| % reads in peaks | rep1 | rep2 | rep1 | rep2 | rep1 | rep2 | rep1 | rep2 |
| 28.37 | 20.33 | 18.19 | 20.68 | 29.43 | 30.91 | 36.35 | 28.50 | |