TABLE 3.

Nucleotide and amino acid identities between FodHV2 and other mycoviruses in the family Hypoviridae.

	Virusa	Acronym	Full sequence		Non-coding region (nt%)b		Coding region (aa%)c				Accesion no.
			Nt%	Aa%	5′	3′	Pro	UGT	RdRp	Hel
α	Cryphonectria hypovirus 1	CHV1/EP713	29	8d	28	25	10e	–f	14	21	M57938
	Cryphonectria hypovirus 2	CHV2/NB58	28	8d	28	28	11	–f	12	21	L29010
	Fusarium graminearum hypovirus 1	FgHV1/HN10	28	7d	27	27	10	–f	13	20	AZT88611
β	Cryphonectria hypovirus 3	CHV3/GH2	46	41	39	26	16	47	65	55	AF188515
	Cryphonectria hypovirus 4	CHV4/SR2	49	47	49	29	17	51	66	64	AY307099
	Sclerotinia sclerotiorum hypovirus 1	SsHV1/SZ150	44	39	28	30	14	42	64	52	JF781304
	Setosphaeria turcica hypovirus 1	StHV1/28A	48	46	50	30	10	47	72	69	JF781304
	Valsa ceratosperma hypovirus 1	VcHV1/MVC86	49	43	38	24	16	49	66	58	AB690372
γ	Sclerotium rolfsii hypovirus 1	SrHV1/BLH1	27	7	22	28	6	–f	12	14	MH037014
	Sclerotinia sclerotiorum hypovirus 2	SsHV2/SX247	24	7	28	27	10	–f	11	13	KJ561218

^aαβγ: selected viruses from the “Alphahypovirus,” the “Betahypovirus,” and the “Gammahypovirus” groups, respectively. ^bThe terminal 100 nucleotides at the 5′ and 3′-UTR were compared to the respective UTR of each virus. ^cThe amino acid sequence of Protease, UGT, RdRp, and Helicase domains of each hypovirus shown in Figure 4A was used for comparison. ^dThe ORFB polyprotein of CHV1, CHV2, and FgHV1 was used for this comparison. ^eThe protease domain in ORFA of CHV1 was used for comparison. ^fNo UGT domain was detected in the polyprotein of CHV1, CHV2, FgHV1, SrHV1 and SsHV2.